groHMM
Bioc currentGRO-seq Analysis Pipeline
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
A pipeline for the analysis of GRO-seq data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
122 19 exported
Complexity
4.4 avg / 25 max
Call network
122 nodes / 90 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,379
Files
64
Compiled share
42.2%
Has compiled src
Yes
Language breakdown
API
Exported functions
19
Internal functions
22
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
62.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.2
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-10-31
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 89%
- References docs
- 4%
Topics
People
- Tulip Nandu maintainer contributor
- Minho Chae author
- Charles G. Danko author
- W. Lee Kraus author fnd
- Andre Martins contributor
- Anusha Nagari contributor
- Pariksheet Nanda contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("groHMM")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-10, which the citation names so these numbers can be found later. More on citing and the projects behind them.