GeomxTools
Bioc currentNanoString GeoMx Tools
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
Tools for NanoString Technologies GeoMx Technology. Package provides functions for reading in DCC and PKC files based on an ExpressionSet derived object. Normalization and QC functions are also included.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
74 26 exported
Complexity
4 avg / 40 max
Call network
74 nodes / 72 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,912
Files
180
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
41
Internal functions
47
Testing & CI
Has tests
Yes
Test-to-code ratio
0.46
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
No
Docs
Roxygen coverage
90.2%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
MIT
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 86%
- References docs
- 0%
Topics
Depended on by (4)
Bioconductor (4)
People
- Maddy Griswold maintainer author
- David Henderson author
- Nicole Ortogero author
- Ronalyn Vitancol author
- Zhi Yang author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GeomxTools")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.