GreyListChIP
Bioc currentGrey Lists -- Mask Artefact Regions Based on ChIP Inputs
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
13 1 exported
Complexity
2.4 avg / 12 max
Call network
13 nodes / 1 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
993
Files
32
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
12
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-05-30
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 20%
Topics
Depended on by (2)
People
- Matt Eldridge maintainer
- Gord Brown author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GreyListChIP")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.