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GreyListChIP

Bioc current

Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

v1.44.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.1 · Apr 17, 2015

Current · Requires R 4.6

1.0 In 23 of 49 releases 3.23

Description

Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing › ChIPSeq
Software › WorkflowStep › Alignment
Software › WorkflowStep › Preprocessing
Software › BiologicalQuestion › DifferentialPeakCalling
Software › Technology › Sequencing
Software › BiologicalQuestion › GenomeAnnotation
Software › BiologicalQuestion › Coverage

Depended on by (2)

Bioconductor (2)

DiffBind epigraHMM

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