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Topic: RNASeq or Homo_sapiens or Sequencing

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69 packages on Bioconductor tagged RNASeq or Homo_sapiens or Sequencing, most distinct IPs first

RNASeq, Homo_sapiens and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202632,07254
DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan		Martin Morgansoftware28 Sep 20266,4909
DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesErik Wright		Erik Wrightsoftware30 Jul 20264,88216
dada2
Accurate, high-resolution sample inference from amplicon sequencing dataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20264,20675
DropletUtils
Utilities for Handling Single-Cell Droplet DataJonathan Griffiths		Jonathan Griffithssoftware27 Sep 20264,10759
decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing DataBenjamin Callahan		Benjamin Callahansoftware28 Apr 20263,00930
DEXSeq
Inference of differential exon usage in RNA-SeqHugo Gruson		Hugo Grusonsoftware28 Apr 20262,837107
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
dittoSeq
User Friendly Single-Cell and Bulk RNA Sequencing VisualizationDaniel Bunis		Daniel Bunissoftware28 Apr 20261,83155
DSS
Dispersion shrinkage for sequencing dataHao Wu		Hao Wusoftware28 Apr 20261,70291
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approachLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,535137
DEGreport
Report of DEG analysisLorena Pantano		Lorena Pantanosoftware28 Apr 20261,462108
deepSNV
Detection of subclonal SNVs in deep sequencing data.Moritz Gerstung		Moritz Gerstungsoftware28 Apr 20261,28679
dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite SequencingKeegan Korthauer		Keegan Korthauersoftware28 Apr 20261,201149
DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqMalgorzata Nowicka		Malgorzata Nowickasoftware28 Apr 20261,19852
derfinderHelper
derfinder helper packageLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,19613
diffHic
Differential Analysis of Hi-C DataAaron Lun		Aaron Lunsoftware28 Apr 20261,15974
densvis
Density-Preserving Data Visualization via Non-Linear Dimensionality ReductionAlan O'Callaghan		Alan O'Callaghansoftware28 Apr 20261,15026
derfinderPlot
Plotting functions for derfinderLeonardo Collado-Torres		Leonardo Collado-Torressoftware28 Apr 20261,083149
DMRcaller
Differentially Methylated Regions CallerNicolae Radu Zabet		Nicolae Radu Zabetsoftware28 Apr 20261,06681
DaMiRseq
Data Mining for RNA-seq data: normalization, feature selection and classificationMattia Chiesa		Mattia Chiesasoftware28 Apr 20261,055258
DEGseq
Identify Differentially Expressed Genes from RNA-seq dataLikun Wang		Likun Wangsoftware28 Apr 20261,03332
DEFormats
Differential gene expression data formats converterAndrzej Oleś		Andrzej Oleśsoftware28 Apr 20261,00061
DEScan2
Differential Enrichment Scan 2Dario Righelli		Dario Righellisoftware28 Apr 2026978128
DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experimentsAristidis G. Vrahatis		Aristidis G. Vrahatissoftware28 Apr 2026971100
DMRScan
Detection of Differentially Methylated RegionsChristian M Page		Christian M Pagesoftware28 Apr 202696419
debrowser
Interactive Differential Expresion Analysis BrowserAlper Kucukural		Alper Kucukuralsoftware28 Apr 2026929223
dreamlet
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designsGabriel Hoffman		Gabriel Hoffmansoftware28 Apr 2026912195
DeMixT
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platformsRuonan Li		Ruonan Lisoftware28 Apr 2026869102