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DRIMSeq

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Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

v1.40.0 · software · GPL (>= 3)
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › AssayDomain › SNP
Software › BiologicalQuestion › AlternativeSplicing
Software › BiologicalQuestion › DifferentialSplicing
Software › ResearchField › Genetics
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing
Software › WorkflowStep
Software › WorkflowStep › MultipleComparison
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression

Depended on by (2)

Bioconductor (2)

BANDITS rnaseqDTU

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