DeMixT
Bioc currentCell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
293 21 exported
Complexity
2.7 avg / 40 max
Call network
293 nodes / 207 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
11,328
Files
81
Compiled share
44.4%
Has compiled src
Yes
Language breakdown
API
Exported functions
18
Internal functions
79
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
94.4%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
5.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-08-15
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
19
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 81%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 22%
Topics
People
- Ruonan Li maintainer
- Shaolong Cao author
- Wenyi Wang author
- Zeya Wang author
- Liyang Xie author