R Observatory: Metrics for FateID version 0.2.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

FateID

0.2.2

Quantification of Fate Bias in Multipotent Progenitors

1packages depend

5.7Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Dominic GrünFirst published 2017-11-1514 releasesCRAN page ↗

Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2018) DOI:10.1038/nmeth.4662.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("FateID", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fateid

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-FateID

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-FateID

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.4 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

13

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 69%
Documented parameters: 100%
Return-value docs: 100%
References docs: 6%

Downloads

5.7K

CRAN downloads in the past year

Rank #8,578 · ~16/day · ~473/mo

Releases R versions

Daily download trend is not available in this view yet.

30130 days

1.1K90 days

5.7K1 year

Compare downloads with other packages →

Also on151 r2u16 autocran1.5K conda_forge466 bioconda

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (13)

graphicsgrDeviceslocfit matrixStats pheatmap princurve randomForest RColorBrewer Rtsne somstatsumaputils

LinkingTo (0)

none

Suggests (3)

DESeq2 knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

RaceID

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Dominic Grün

no longer listed · 0.0.9 to 0.2.2

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.2.2Latest
2022-06-14 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
0.2.1
2021-10-05 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2.0
2021-04-07 · diff ↗
unarchivedReturned to CRAN
2021-04-07
archivedRemoved from CRAN
2021-03-18
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
0.1.9
2019-09-21 · diff ↗
0.1.8
2019-09-02 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.1.7
2019-03-28 · diff ↗

Show 10 earlier events

0.1.6
2019-02-27 · diff ↗
0.1.5
2018-11-13 · diff ↗
0.1.4
2018-08-07 · diff ↗
0.1.3
2018-07-27 · diff ↗
0.1.2
2018-07-05 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.1
2018-03-26 · diff ↗
0.1.0
2017-11-15 · diff ↗
0.0.9
2017-11-15
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-11-15
Total releases: 14 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 235 KB / 1 file
Download size: 2.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("FateID")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for FateID version 0.2.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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