R Observatory: Metrics for nevada version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

nevada

0.2.0

Network-Valued Data Analysis

0packages depend

2.6Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Aymeric StammFirst published 2021-09-252 releasesCRAN page ↗GitHub ↗

A flexible statistical framework for network-valued data analysis. It leverages the complexity of the space of distributions on graphs by using the permutation framework for inference as implemented in the 'flipr' package. Currently, only the two-sample testing problem is covered and generalization to k samples and regression will be added in the future as well. It is a 4-step procedure where the user chooses a suitable representation of the networks, a suitable metric to embed the representation into a metric space, one or more test statistics to target specific aspects of the distributions to be compared and a formula to compute the permutation p-value. Two types of inference are provided: a global test answering whether there is a difference between the distributions that generated the two samples and a local test for localizing differences on the network structure. The latter is assumed to be shared by all networks of both samples. References: Lovato, I., Pini, A., Stamm, A., Vantini, S. (2020) "Model-free two-sample test for network-valued data" doi:10.1016/j.csda.2019.106896; Lovato, I., Pini, A., Stamm, A., Taquet, M., Vantini, S. (2021) "Multiscale null hypothesis testing for network-valued data: Analysis of brain networks of patients with autism" doi:10.1111/rssc.12463.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("nevada", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("astamm/nevada")

Development version from astamm/nevada. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nevada

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-nevada

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-nevada

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 4.7 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

97%

Documentation · exports

17

Dependencies · direct

Check history

NOTE2026-04-22
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
3 OK · 10 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 462 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

2.6K

CRAN downloads in the past year

Rank #14,943 · ~7/day · ~219/mo

Releases R versions

Daily download trend is not available in this view yet.

17530 days

69690 days

2.6K1 year

Compare downloads with other packages →

Also on396 r2u26 autocran

Repository

GitHub ↗ astamm/nevada

6Stars

2Forks

3Open issues

2Open PRs

2Releases

227Commits

2Contributors

License GPL-3.0 · 227 commits · Last activity 2024-12-11

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/astamm/nevada on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (17)

igraph Rcpp tidyr dplyr purrr tibble forcats ggplot2 rlang magrittr flipr cli withr tsne umap furrr rgeomstats

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (3)

knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Aymeric Stamm

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.2.0Latest
2023-09-03 · current release · diff ↗
unarchivedReturned to CRAN
2023-09-03
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-07-11
requires archived package 'flipr'
R
R 4.2.0 released · 2022-04-22
0.1.0
2021-09-25
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-25
Total releases: 2 / 5 yrs
License: GPL (>= 3) OSI
Download size: 150 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("nevada")

Format

Stamm, A., Lovato, I., Pini, A., & Vantini, S. (2023). nevada: Network-Valued Data Analysis (Version 0.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.nevada

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for nevada version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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