R Observatory: Metrics for HVT version 26.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HVT

26.1.3Package record

Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis

0packages depend

4.7Kdownloads / year

26.5%test coverage

13/13flavors OK

Overview

About

Maintained by Zubin DowlatyCRAN page ↗GitHub ↗Issues ↗

Facilitates building topology preserving maps for data analysis.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HVT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Mu-Sigma/HVT")

Development version from Mu-Sigma/HVT. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hvt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HVT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HVT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.9 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 26.1.3

READMEYes · 2,473 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 24 (2 internal)
Examples that run: 95%18 run in a plain check · 1 never run
Exported functions with examples: 86%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

HVT: Collection of functions used to build hierarchical topology preserving maps

How these are measured

Downloads

4.7K

CRAN downloads in the past year

Rank #7,241 · ~13/day · ~388/mo

Releases R versions

Daily download trend is not available in this view yet.

53630 days

1.2K90 days

4.7K1 year

Compare downloads with other packages →

Also on123 r2u12 autocran

How downloads are counted

Repository

mu-sigma/hvt ↗Organization: Mu-SigmaFork of Mu-Sigma/muHVT

4Stars

2Forks

0Open issues

0Open PRs

0Releases

530Commits

17Commit identities

530 commits · Last activity 2026-08-21

Responsiveness

How these are sampled

PRs merged (all time): 98%
Median days to close, 50 most recently updated closed issues: 142
Median days to close, 50 most recently updated closed PRs: 0

Commits over time

2026-07-19 · 5262026-08-23 · 530

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/mu-sigma/hvt on 2026-10-11.

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen on or before 2026-08-21
Commits: some crediting it in the message, count not recorded

How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

44 external dependencies (excludes base and recommended)

Installing HVT adds 57 packages (39 with compiled code, 49 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, igraph 4.8 MB.

Depends (1)

R >= 4.0.0

Imports (21)

MASSgrDevicessplancsstatsdplyr NbClust purrr magrittr ggplot2 tidyr scalesclusterreshape2 FNN Rtsne umap plyr markovchainmethodsdeldir gridExtra

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Zubin Dowlaty

Author, Maintainer since 25.2.4 (2025)

Mu Sigma, Inc.

Copyright holder

Previously maintained by "Mu Sigma, Inc." (23.11.1 to 25.2.3).

Releases (15)

Pick two releases to compare their code metrics.

26.1.3Latest
record
2026-04-29 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
26.1.2
record
2026-02-05 · diff ↗
26.1.1
record
2026-01-22 · diff ↗
25.2.8
record
2025-12-18 · diff ↗ ·
added 1 export
plotExAnteRawSeries
25.2.7
record
2025-10-22 · diff ↗ ·
added 2 exports
OptimizationResults, plotMsmKN
25.2.6
record
2025-10-14 · diff ↗ ·
removed 1 export
VQ_codebookSplit

added 1 export
HVTMSMoptimization
25.2.5
record
2025-07-04 · diff ↗
25.2.4
record
2025-06-10 · diff ↗
R
R 4.5.0 released · 2025-04-11
25.2.3
record
2025-03-27 · diff ↗
25.2.2
record
2025-02-05 · diff ↗
25.2.1
record
2025-02-04 · diff ↗ ·
removed 3 exports
getCellId, hvq, madPlot

added 3 exports
msm, plotZscore, summary
24.9.1
record
2024-09-11 · diff ↗ ·
added 1 export
clustHVT
24.5.2
record
2024-05-15 · diff ↗
24.5.1
record
2024-05-08 · diff ↗ ·
removed 14 exports
HVT, diagPlot, exploded_hmap, get_cell_id, hvtHmap, mlayerHVT, multiNormalDist, plotCells, plotDiag, predictHVT, predictLayerHVT, qeHistPlot, removeOutliers, sammonsProjection

added 13 exports
displayTable, edaPlots, getCellId, getTransitionProbability, plotAnimatedFlowmap, plotModelDiagnostics, plotNovelCells, plotQuantErrorHistogram, plotStateTransition, reconcileTransitionProbability, scoreHVT, scoreLayeredHVT, trainHVT

Show 3 earlier eventsHide 3 earlier events

R
R 4.4.0 released · 2024-04-24
23.11.1
record
2023-11-19
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-19
Total releases: 15 / 3 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 4.0.0
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HVT")

Format

Dowlaty, Z., & Mu Sigma, Inc. (2026). HVT: Constructing Hierarchical Voronoi Tessellations and Overlay Heatmaps for Data Analysis (Version 26.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.HVT

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HVT version 26.1.3 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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