R Observatory: Metrics for AbSolution version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AbSolution

1.0.1

Interactive Feature-Based Analysis of AIRR-Seq Data

0packages depend

1.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Rodrigo García-ValienteFirst published 2026-04-222 releasesCRAN page ↗GitHub ↗

An interactive framework for the exploration and analysis of adaptive immune receptor repertoire sequencing (AIRR-seq) data. It enables large-scale computation and integrated analysis of sequence-derived features, including physicochemical properties, amino acid descriptor sets, sequence motifs, compositional patterns, and somatic hypermutation metrics. The application supports multiscale analysis across sequences, clones, and repertoires, with interactive visualizations and statistical feature selection. 'AbSolution' also facilitates reproducible research by enabling structured export of data, code, parameters, and computational environments. See https://github.com/EDS-Bioinformatics-Laboratory/AbSolution for more details.

Latest changes · 1.0.1

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("AbSolution", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EDS-Bioinformatics-Laboratory/AbSolution")

Development version from EDS-Bioinformatics-Laboratory/AbSolution. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-absolution

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 5.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.07

not tracked

Coverage

100%

Documentation · exports

54

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-28
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-07-27
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 5 earlier snapshots

ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
11 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-22
7 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 435 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 8%
Documented parameters: 27%
Return-value docs: 86%
References docs: 0%

Downloads

1.9K

CRAN downloads in the past year

Rank #6,326 · ~5/day · ~156/mo

Releases R versions

Daily download trend is not available in this view yet.

36730 days

1.3K90 days

1.9K1 year

Compare downloads with other packages →

Also on56 r2u

Repository

GitHub ↗ eds-bioinformatics-laboratory/absolution

3Stars

0Forks

0Open issues

0Open PRs

0Releases

28Commits

1Contributors

airrseqrresearchencorereproducibility

License GPL-3.0 · 28 commits · Last activity 2026-05-10 · 0% stars, 30d

Stars over time

2026-04-05 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/eds-bioinformatics-laboratory/absolution on 2026-08-09.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

50 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.4.0

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Rodrigo García-Valiente

Maintainer, Author

Authors (3)

Rodrigo García-Valiente

Maintainer, Author

Charisios Triantafyllou

Author

Antoine van Kampen

Author, Thesis advisor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.1Latest
2026-04-27 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.0
2026-04-22
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-22
Total releases: 2 / 1 yrs
License: GPL (>= 3) OSI
Additional repositories: bioconductor.org
Minimum R: ≥ 4.4.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AbSolution")

Format

García-Valiente, R., Triantafyllou, C., & van Kampen, A. (2026). AbSolution: Interactive Feature-Based Analysis of AIRR-Seq Data (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.AbSolution

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AbSolution version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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