R Observatory: Metrics for omock version 0.7.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

omock

0.7.0Package record

Creation of Mock Observational Medical Outcomes Partnership Common Data Model

0packages dependsuggested by 14

9.3Kdownloads / year

89.3%test coverage

13/13flavors OK

Overview

About

Maintained by Mike DuCRAN page ↗GitHub ↗Website ↗Issues ↗

Creates mock data for testing and package development for the Observational Medical Outcomes Partnership common data model. The package offers functions crafted with pipeline-friendly implementation, enabling users to effortlessly include only the necessary tables for their testing needs.

Changes in 0.7.0

Deprecated mockConcepts() because it creates placeholder concept rows that may be mistaken for real OMOP vocabulary content. Use mockCdmReference(vocabularySet = "eunomia"), mockVocabularyTables(), or subsetVocabularyTables() instead.
changeCdmVersion() now uses omopgenerics::compareOmopTableFields() and aligns local OMOP tables to the target CDM version fields.
mockCdmFromDataset() now validates cdmVersion and converts loaded datasets to the requested CDM version when needed.
Downloaded mock datasets within 99.99% of their expected size are now reused; users are only asked to delete a dataset when it appears incomplete.
Mock dataset CDM names now resolve to a downloadable dataset version before download, avoiding invalid URL errors when a requested target CDM version is not directly hosted.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("omock", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ohdsi/omock")

Development version from ohdsi/omock. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omock

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-omock

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-omock

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-30
ERROR12 OK, 1 ERROR2026-09-04
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-20

Show 8 earlier changesHide 8 earlier changes

ERROR11 OK, 2 ERROR2026-06-19
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-24
ERROR12 OK, 1 ERROR2026-05-17
OK13 OK2026-05-15
ERROR12 OK, 1 ERROR2026-05-13
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.7.0

READMEYes · 304 wordsVignettesYes · 6 · dynamicNEWSYes · 100% structured · mentions 0.7.0Citation fileYes · cites a publicationWebsiteYes · pkgdown

Cites a JOSS paper

Help pages: 25 (2 internal)includes a package overview page
Examples that run: 61%14 run in a plain check · 9 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 96%
Documented parameters: 98%
Return-value docs: 96%
Help pages citing references: 0%

Vignettes (6)

How these are measured

Downloads

9.3K

CRAN downloads in the past year

Rank #4,128 · ~25/day · ~773/mo

Releases R versions

Daily download trend is not available in this view yet.

95430 days

2.1K90 days

9.3K1 year

Compare downloads with other packages →

Also on357 r2u7 autocran

How downloads are counted

Repository

ohdsi/omock ↗Organization: OHDSI

5Stars

2Forks

16Open issues

0Open PRs

12Releases

453Commits

5Commit identities

License file reads as Apache-2.0 · 453 commits · Last activity 2026-06-19 · 0% stars, 30d · Default branch at 0.7.0.9000, ahead of CRAN 0.7.0 (checked 2026-10-11)

Responsiveness

How these are sampled

PRs merged (all time): 98%
Median days to close, 50 most recently updated closed issues: 41
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2024-06-21 · 22026-08-05 · 5

How these are measured

PracticesBeta

13 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/ohdsi/omock on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Governance and community (1)

Contributing guide

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-06-29 · The repository has a site deploy workflow

pkgdown site last built 2026-06-29

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 3 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Installing omock adds 38 packages (19 with compiled code, 27 MB of source tarballs). Heaviest: stringi 11 MB, arrow 4.2 MB, vctrs 1.0 MB.

Depends (1)

R >= 4.1.0

Imports (12)

arrow cli dplyr lifecycle clockmethodsomopgenerics (>= 1.4.0)purrr readr rlangstatsutils

LinkingTo (0)

none

Suggests (10)

CDMConnector DBI duckdb ggplot2 gt knitr PatientProfiles rmarkdown stringr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 14

Show all 14 packagesHide all 14 packages

Suggests, most downloaded first

omopgenerics PatientProfiles CodelistGenerator CohortConstructor CohortCharacteristics DrugUtilisation OmopSketch CohortSurvival PhenotypeR MeasurementDiagnostics OmopConstructor OmopIndices CohortSymmetry OmopOnSpark

How these are counted

Code & Tests

Datasets

People & History

People (5)

Mike Du

Author, Maintainer since 0.1.0 (2024)

Edward Burn

Author

Martí Català

Author · added in 0.6.0

Xihang Chen

Author

Nuria Mercade-Besora

Author

Listed in earlier versions (1)

Marti Catala

no longer listed · 0.1.0 to 0.5.0

Releases (11)

Pick two releases to compare their code metrics.

0.7.0Latest
record
2026-06-19 · current release · diff ↗ ·
added 1 export
subsetVocabularyTables
R
R 4.6.0 released · 2026-04-24
0.6.2
record
2026-03-23 · diff ↗
0.6.1
record
2026-02-03 · diff ↗
0.6.0
record
2025-10-31 · diff ↗ ·
removed 5 exports
attrition, bind, cohortCount, dropTable, settings

added 14 exports
achillesColumns, achillesTables, cdmDisconnect, cdmReference, cohortColumns, cohortTables, dropSourceTable, listSourceTables, omopColumns, omopDataFolder, omopTables, readSourceTable, tableName, tableSource
0.5.0
record
2025-09-01 · diff ↗ ·
added 1 export
mockVocabularySet
0.4.0
record
2025-06-12 · diff ↗ ·
added 6 exports
availableMockDatasets, downloadMockDataset, isMockDatasetDownloaded, mockCdmFromDataset, mockDatasetsFolder, mockDatasetsStatus
R
R 4.5.0 released · 2025-04-11
0.3.2
record
2025-01-23 · diff ↗
0.3.1
record
2024-10-15 · diff ↗
0.3.0
record
2024-09-20 · diff ↗ ·
added 2 exports
mockProcedureOccurrence, mockVisitOccurrence
0.2.0
record
2024-05-20 · diff ↗ ·
removed 1 export
mockCdmFromTable

added 8 exports
mockCdmFromTables, mockConcepts, mockConditionOccurrence, mockDeath, mockDrugExposure, mockMeasurement, mockObservation, mockVocabularyTables
R
R 4.4.0 released · 2024-04-24
0.1.0
record
2024-03-08
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-03-08
Total releases: 11 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Bundled data: 1.3 KB / 1 file
Download size: 3.6 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("omock")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.21105/joss.08178.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for omock version 0.7.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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