sensiPhy

Sensitivity Analysis for Comparative Methods

v0.8.5 · Apr 2, 2020 · GPL-2

Description

An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).

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14 NOTE

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	241.7s
r-devel-linux-x86_64-debian-gcc	NOTE	160.8s
r-devel-linux-x86_64-fedora-clang	NOTE	382.4s
r-devel-linux-x86_64-fedora-gcc	NOTE	390.1s
r-devel-macos-arm64	NOTE	75s
r-devel-windows-x86_64	NOTE	271s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	208s
r-oldrel-windows-x86_64	NOTE	326s
r-patched-linux-x86_64	NOTE	227.2s
r-release-linux-x86_64	NOTE	217.2s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	245s
r-release-windows-x86_64	NOTE	238s

Check details (16 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

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checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-oldrel-windows-x86_64

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checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-patched-linux-x86_64

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checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
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NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
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NOTE r-release-macos-x86_64

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checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
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NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
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Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?

Dependency Network

Version History

new 0.8.5 Mar 10, 2026

updated 0.8.5 ← 0.8.4 diff Apr 1, 2020

updated 0.8.4 ← 0.8.3 diff Dec 9, 2019

updated 0.8.3 ← 0.8.2 diff Sep 10, 2018

updated 0.8.2 ← 0.8.1 diff Jun 11, 2018

updated 0.8.1 ← 0.8.0 diff Jan 22, 2018

updated 0.8.0 ← 0.7.0 diff Dec 14, 2017

updated 0.7.0 ← 0.6.0 diff Sep 6, 2017

updated 0.6.0 ← 0.5.0 diff Jan 13, 2017

new 0.5.0 Jul 17, 2016

Maintainer

Gustavo Paterno

Dependencies

Depends

R (>= 3.4.0) ape (>= 3.3) phylolm (>= 2.4) ggplot2 (>= 2.1.0)

Imports

caper (>= 0.5.2) phytools (>= 0.6) geiger (>= 2.0)

Suggests

knitr rmarkdown

Compilation

No compilation needed

First Published

Jul 17, 2016

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