CRAN requires the check problems on this package to be fixed before 2026-08-31 or it will be archived.

sensiPhy

0.8.5

Sensitivity Analysis for Comparative Methods

0packages depend

4.2Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Gustavo PaternoFirst published 2016-07-189 releasesCRAN page ↗GitHub ↗

An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("sensiPhy", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("paternogbc/sensiPhy")

Development version from paternogbc/sensiPhy. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sensiphy

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-sensiPhy

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 6.4 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 70%
Documented parameters: 100%
Return-value docs: 98%
References docs: 69%

Downloads

4.2K

CRAN downloads in the past year

Rank #14,118 · ~12/day · ~353/mo

Releases R versions

Daily download trend is not available in this view yet.

25530 days

75790 days

4.2K1 year

Compare downloads with other packages →

Also on111 r2u33 autocran

Repository

GitHub ↗ paternogbc/sensiphy

14Stars

4Forks

6Open issues

0Open PRs

13Releases

1,422Commits

8Contributors

rphylogeneticsecologyevolutioncomparative-methodssensitivity-analysiscran

License GPL-2.0 · 1,422 commits · Last activity 2020-06-10

Stars over time

2025-05-01 · 142026-07-07 · 14

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/paternogbc/sensiphy on 2026-07-19.

Continuous integration (1)

Travis CI

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (4)

R >= 3.4.0ape phylolm ggplot2 (>= 2.1.0)

Imports (3)

caper phytools geiger

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Gustavo Paterno

Maintainer, Author

Authors (3)

Gustavo Paterno

Maintainer, Author

Caterina Penone

Author

Gijsbert Werner

Author

Contributors (1)

Pablo Martinez

Contributor · added in 0.7.0

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.8.5Latest
2020-04-02 · current release · diff ↗
0.8.4
2019-12-10 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.8.3
2018-09-11 · diff ↗
0.8.2
2018-06-12 · diff ↗
unarchivedReturned to CRAN
2018-06-12
archivedRemoved from CRAN
2018-06-01
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
0.8.1
2018-01-23 · diff ↗

Show 6 earlier events

0.8.0
2017-12-15 · diff ↗
0.7.0
2017-09-07 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.6.0
2017-01-14 · diff ↗
0.5.0
2016-07-18
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-07-18
Total releases: 9 / 10 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.4.0
Bundled data: 280 KB / 6 files
Download size: 713 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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