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OUwie

Analysis of Evolutionary Rates in an OU Framework

v2.10 · Jun 15, 2022 · GPL (>= 2)

Description

Estimates rates for continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al (2012).

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CRAN Check Status

1 ERROR
2 NOTE
11 OK
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'OUwie_2.1_adds.Rmd' using rmarkdown
Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-
...[truncated]...
 ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-15'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-16'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.

! Package pdftex.def Error: File `4ed9dfac377008b6f532208ab82e8ceb70ece066.pdf'
 not found: using draft setting.

Error: processing vignette 'OUwie_2.1_adds.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/OUwie.Rcheck/vign_test/OUwie/vignettes/OUwie_2.1_adds.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See OUwie_2.1_adds.log for more info.
--- failed re-building 'OUwie_2.1_adds.Rmd'

SUMMARY: processing the following file failed:
  'OUwie_2.1_adds.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
          
...[truncated]...
  role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
          
...[truncated]...
  role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'OUwie_2.1_adds.Rmd' using rmarkdown
Warning in eng_r(options) :
  Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE bu
...[truncated]...
rg/tinytex/r/#debugging for debugging tips. See OUwie_2.1_adds.log for more info.
--- failed re-building 'OUwie_2.1_adds.Rmd'

SUMMARY: processing the following file failed:
  'OUwie_2.1_adds.Rmd'

Error: Vignette re-building failed.
Execution halted
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
          
...[truncated]...
  role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
          
...[truncated]...
  role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.

Dependency Network

Dependencies Reverse dependencies ape corpcor nloptr geiger RColorBrewer igraph numDeriv phytools paleotree phangorn lhs interp phylolm OUwie

Version History

new 2.10 Mar 10, 2026
updated 2.10 ← 2.6 diff Jun 14, 2022
updated 2.6 ← 2.5 diff Feb 3, 2021
updated 2.5 ← 2.4 diff Oct 19, 2020
updated 2.4 ← 2.3 diff Aug 4, 2020
updated 2.3 ← 2.2 diff Jun 24, 2020
updated 2.2 ← 2.1 diff Jun 14, 2020
updated 2.1 ← 1.57 diff May 11, 2020
updated 1.57 ← 1.53 diff Dec 5, 2019
updated 1.53 ← 1.50 diff Jun 10, 2019
updated 1.50 ← 1.49 diff Jun 17, 2016
updated 1.49 ← 1.48 diff Feb 27, 2016
updated 1.48 ← 1.46 diff Jan 6, 2016
updated 1.46 ← 1.45 diff Sep 4, 2015
updated 1.45 ← 1.44 diff Mar 8, 2015
updated 1.44 ← 1.43 diff Feb 18, 2015
updated 1.43 ← 1.42 diff Jul 25, 2014
updated 1.42 ← 1.41 diff Mar 31, 2014
updated 1.41 ← 1.40 diff Mar 13, 2014
updated 1.40 ← 1.39 diff Feb 17, 2014