treats

1.1.6

Trees and Traits Simulations

0packages depend

6.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Thomas GuillermeFirst published 2023-11-243 releasesCRAN page ↗GitHub ↗

A modular package for simulating phylogenetic trees and species traits jointly. Trees can be simulated using modular birth-death parameters (e.g. changing starting parameters or algorithm rules). Traits can be simulated in any way designed by the user. The growth of the tree and the traits can influence each other through modifiers objects providing rules for affecting each other. Finally, events can be created to modify both the tree and the traits under specific conditions ( Guillerme, 2024 DOI:10.1111/2041-210X.14306).

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("treats", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("TGuillerme/treats")

Development version from TGuillerme/treats. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-treats

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 3.9 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
WARNING2026-06-07
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-09
12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 5%

Downloads

6.8K

CRAN downloads in the past year

Rank #6,458 · ~19/day · ~571/mo

Releases R versions

Daily download trend is not available in this view yet.

31430 days

1.5K90 days

6.8K1 year

Compare downloads with other packages →

Also on394 r2u

Repository

GitHub ↗ tguillerme/treats

3Stars

2Forks

12Open issues

0Open PRs

4Releases

686Commits

3Contributors

686 commits · Last activity 2026-05-07

Stars over time

2024-04-10 · 22026-07-07 · 3

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/tguillerme/treats on 2026-07-19.

Continuous integration (1)

GitHub Actions

Coverage (1)

Codecov

Governance and community (1)

Issue templates

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (4)

R >= 4.0.0ape dispRitystats

Imports (6)

graphicsgeigerMASSmethodsutilsrgl

LinkingTo (0)

none

Suggests (2)

testthat knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Thomas Guillerme

Author, Maintainer, Copyright holder

Authors (1)

Thomas Guillerme

Author, Maintainer, Copyright holder

Thomas Guillerme

Author, Maintainer, Copyright holder

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.6Latest
2025-05-15 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.1
2024-11-11 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0
2023-11-24
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-24
Total releases: 3 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Download size: 90 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Phylogenetics

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