R Observatory: Metrics for WGCNA version 1.74

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

WGCNA

1.74

Weighted Correlation Network Analysis

16packages depend

277.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Peter LangfelderFirst published 2010-07-2668 releasesCRAN page ↗

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) doi:10.2202/1544-6115.1128 and Langfelder and Horvath (2008) doi:10.1186/1471-2105-9-559. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Install

R (CRAN)Ubuntu (r2u)

install.packages("WGCNA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wgcna

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 8.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

15

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 97%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 30%

Downloads

277.2K

CRAN downloads in the past year

Rank #613 · ~759/day · ~23.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

57.7K30 days

100.1K90 days

277.2K1 year

Compare downloads with other packages →

Also on2.3K r2u14.5K bioconda67 c2d4u

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.0dynamicTreeCut fastcluster

Imports (13)

statsgrDevicesutilsmatrixStats Hmisc imputesplinesforeach doParallel preprocessCoresurvivalparallelRcpp

LinkingTo (1)

Rcpp

Suggests (3)

infotheo entropy minet

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

16direct

0indirect

BioM2 DiPALM DrDimont FREEtree MRPC Patterns TemporalForest coreheat scpoisson ADAPTS IOBR TRexSelector corrselect fuzzyforest maGUI scITD

Code & Tests

Datasets

People & History

People (8)

Maintainer (1)

Peter Langfelder

Author, Maintainer

Authors (8)

Peter Langfelder

Author, Maintainer

Chaochao Cai

Author · added in 1.73

Jun Dong

Author · added in 1.15

Steve Horvath

Author

Jeremy Miller

Author · added in 0.93

Lin Song

Author · added in 0.93

Andy Yip

Author · added in 0.93

Bin Zhang

Author · added in 1.73

Listed in earlier versions (3)

Steve Horvath with contributions by Jun Dong

no longer listed · 0.93 to 1.14

and Bin Zhang

no longer listed · 0.93 to 1.72-5

Steve Horvath with contributions by Chaochao Cai

no longer listed · 1.15 to 1.72-5

Package Timeline

68 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.74Latest
2026-01-30 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.73
2024-09-18 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.72-5
2023-12-07 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.72-1
2023-01-18 · diff ↗
1.71
2022-04-23 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.70-3
2021-02-28 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.69
2020-02-28 · diff ↗
1.68
2019-05-23 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 71 earlier events

1.67
2019-04-11 · diff ↗
1.66
2018-10-24 · diff ↗
1.64-1
2018-09-11 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.63
2018-02-27 · diff ↗
1.62
2018-02-13 · diff ↗
1.61
2017-08-05 · diff ↗
1.60
2017-07-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.51
2016-03-15 · diff ↗
1.49
2015-12-29 · diff ↗
1.48
2015-10-30 · diff ↗
1.47
2015-06-16 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.46
2015-03-28 · diff ↗
1.43
2015-01-15 · diff ↗
1.42
2014-12-04 · diff ↗
1.41-1
2014-06-14 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.34
2013-10-10 · diff ↗
3.0.2
2013-08-29 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.27-1
2013-04-02 · diff ↗
3.0.0
2013-04-01 · diff ↗
1.26
2013-03-07 · diff ↗
1.25-2
2012-12-02 · diff ↗
2.15.3
2012-12-01 · diff ↗
1.25-1
2012-11-09 · diff ↗
1.25
2012-11-09 · diff ↗
1.23-1
2012-08-03 · diff ↗
2.15.2
2012-08-02 · diff ↗
1.22
2012-06-19 · diff ↗
2.15.1
2012-06-18 · diff ↗
1.20
2012-04-24 · diff ↗
R
R 2.15.0 released · 2012-03-30
2.15.0
2012-03-03 · diff ↗
1.19
2012-03-03 · diff ↗
1.18-2
2012-01-13 · diff ↗
2.14.2
2012-01-12 · diff ↗
1.18-1
2012-01-05 · diff ↗
1.18
2011-12-24 · diff ↗
2.14.1
2011-12-22 · diff ↗
1.17
2011-12-07 · diff ↗
1.15
2011-11-12 · diff ↗
1.14
2011-11-10 · diff ↗
R
R 2.14.0 released · 2011-10-31
1.13
2011-08-18 · diff ↗
2.13.2
2011-08-17 · diff ↗
1.12
2011-08-17 · diff ↗
1.11-3
2011-07-07 · diff ↗
2.13.1
2011-07-06 · diff ↗
1.11-2
2011-06-06 · diff ↗
1.11-1
2011-06-01 · diff ↗
1.11
2011-05-13 · diff ↗
1.10-2
2011-04-24 · diff ↗
R
R 2.13.0 released · 2011-04-13
1.00
2011-02-15 · diff ↗
2.12.2
2011-02-04 · diff ↗
0.99
2010-12-22 · diff ↗
0.98
2010-11-13 · diff ↗
2.12.1
2010-11-12 · diff ↗
0.97
2010-11-03 · diff ↗
R
R 2.12.0 released · 2010-10-15
2.12.0
2010-09-23 · diff ↗
0.96
2010-09-23 · diff ↗
0.95
2010-09-17 · diff ↗
0.94
2010-09-08 · diff ↗
0.93
2010-08-26 · diff ↗
0.92-3
2010-07-26
R
R 2.11.0 released · 2010-04-22

Package metadata

First published: 2010-07-26
Total releases: 68 / 16 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.0
Bundled data: 614 KB / 6 files
Download size: 1.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Network Analysis Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("WGCNA")

Format

Langfelder, P., Cai, C., Dong, J., Horvath, S., Miller, J., Song, L., Yip, A., & Zhang, B. (2026). WGCNA: Weighted Correlation Network Analysis (Version 1.74) [Computer software]. https://doi.org/10.32614/CRAN.package.WGCNA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for WGCNA version 1.74 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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