R Observatory: Metrics for maGUI version 4.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

maGUI

4.0

A Graphical User Interface for Microarray Data Analysis and Annotation

0packages depend

2.9Kdownloads / year

–test coverage

9/9checks pass

Overview

About

Maintained by Dhammapal BharneFirst published 2015-10-128 releasesCRAN page ↗

Provides a comprehensive graphical user interface for analysis of Affymetrix, Agilent, Illumina, Nimblegen and other microarray data. It can perform miscellaneous tasks such as gene set enrichment and test analyses, identifying gene symbols and building co-expression network. It can also estimate sample size for atleast two-fold expression change. The current version is its slenderized form for compatable and flexible implementation.

Install

R (CRAN)Ubuntu (r2u)

install.packages("maGUI", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-magui

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

9OK

Slowest check: 1.3 min · r-release-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

4

Dependencies · direct

Check history

OK2026-04-25
8 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
8 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #13,805 · ~8/day · ~239/mo

Releases R versions

Daily download trend is not available in this view yet.

23230 days

74290 days

2.9K1 year

Compare downloads with other packages →

Also on119 r2u26 c2d4u

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

tcltkgrDevicesutilsBiobase

LinkingTo (0)

none

Suggests (29)

tkrplot gWidgets2 Rgraphviz ssize Biostrings BiocManager RSQLite GEOquery GEOmetadb RBGL WGCNA KEGGREST KEGGgraph pdInfoBuilder lumi oligo graph affy genefilter beadarray GOstats GO.db Category annotate impute limmagraphicsmethodsstats

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Dhammapal Bharne

no longer listed · 1.0 to 4.0

Praveen Kant

no longer listed · 1.0

Vaibhav Vindal

no longer listed · 1.0 to 3.0

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
4.0Latest
2022-04-12 · current release · diff ↗
unarchivedReturned to CRAN
2022-04-12
archivedRemoved from CRAN
2021-11-08
requires orphaned package 'RGtk2'
R
R 4.1.0 released · 2021-05-18
3.0
2020-11-13 · diff ↗
unarchivedReturned to CRAN
2020-11-13
archivedRemoved from CRAN
2020-08-26
check issues were not corrected in time
2.4
2020-05-18 · diff ↗
unarchivedReturned to CRAN
2020-05-18
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-12-07
installation issues were not corrected in time Missing required BioC 3.11 package

Show 12 earlier events

R
R 3.6.0 released · 2019-04-26
2.3
2019-03-21 · diff ↗
unarchivedReturned to CRAN
2019-03-21
archivedRemoved from CRAN
2018-11-01
check warnings were not corrected despite a month's notice Needed change for BioC 3.8
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
2.2
2017-03-04 · diff ↗
2.1
2017-02-16 · diff ↗
2.0
2017-01-11 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.0
2015-10-12
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-10-12
Total releases: 8 / 11 yrs
License: GPL-2 OSI
Download size: 84 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("maGUI")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for maGUI version 4.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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