R Observatory: Metrics for dynamicTreeCut version 1.63-1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

dynamicTreeCut

1.63-1Package record

Methods for Detection of Clusters in Hierarchical Clustering Dendrograms

12packages dependsuggested by 2

239.1Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Peter LangfelderCRAN page ↗Website ↗

Contains methods for detection of clusters in hierarchical clustering dendrograms.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dynamicTreeCut", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dynamictreecut

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dynamicTreeCut

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dynamicTreeCut

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "Peter.Langfelder@gmail.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut",
                      email = "binzhang.ucla@gmail.com"),
               person(given = c("with", "contributions", "from", "Steve"),
                      family = "Horvath",
                      role = "aut",
                      email = "SHorvath@mednet.ucla.edu"))
as necessary.

CRAN check page ↗

Slowest check: 48 s · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.63-1

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 7includes a package overview page
Examples that run: 100%2 run in a plain check
Exported functions with examples: 33%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 43%

How these are measured

Downloads

239.1K

CRAN downloads in the past year

Rank #612 · ~655/day · ~19.9K/mo

Releases R versions

Daily download trend is not available in this view yet.

18.4K30 days

95.6K90 days

239.1K1 year

Compare downloads with other packages →

Also on3.8K r2u7 autocran17.1K conda_forge329 bioconda80 c2d4u

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing dynamicTreeCut adds no packages beyond those that come with R.

Depends (2)

R >= 2.3.0stats

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

12direct

7indirect

Depends 4 · Imports 8

Suggested by 2

Show all 14 packagesHide all 14 packages

Depends, Imports or LinkingTo, most downloaded first

WGCNA bioregion MRPC allelematch moduleColor MitoHEAR MetaHD spatialGE phytoclass TemporalForest PropClust protoshiny

Suggests, most downloaded first

dendextend familiar

How these are counted

Code & Tests

People & History

People (from the free-text Author field) (3)

Peter Langfelder

Bin Zhang

with contributions from Steve Horvath

Maintainer since 1.11-3 (2008)

Releases (14)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
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R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
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R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
3.0.3Latest
record
2013-11-03 · current release · diff ↗
3.0.2
record
2013-07-24 · diff ↗
R
R 3.0.0 released · 2013-04-03

Show 24 earlier eventsHide 24 earlier events

R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
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R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
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R 2.11.0 released · 2010-04-22
2.10.1
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2009-11-23 · diff ↗
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R 2.10.0 released · 2009-10-26
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R 2.9.0 released · 2009-04-17
2.10.0
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2009-01-29 · diff ↗
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R 2.8.0 released · 2008-10-20
2.7.1
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2008-06-03 · diff ↗
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R 2.7.0 released · 2008-04-22
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R 2.6.0 released · 2007-10-03
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R 2.5.0 released · 2007-04-24
2.5.0
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2007-03-12 · diff ↗ ·
added 1 export
pattern:^[^\\.]
1.63-1
record
2016-03-11 · diff ↗
1.62
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2014-04-22 · diff ↗
1.60-1
record
2013-11-04 · diff ↗
1.60
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2013-08-29 · diff ↗
1.21
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2009-11-22 · diff ↗
1.20
record
2009-02-05 · diff ↗
1.12
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2008-08-06 · diff ↗
1.11-3
record
2008-04-04
R
R 2.4.0 released · 2006-10-03

Package metadata

First published: 2007-03-12
Total releases: 14 / 19 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.3.0
Download size: 23 KB

Appears in task views

Cluster Analysis & Finite Mixture Models

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("dynamicTreeCut")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for dynamicTreeCut version 1.63-1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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