R Observatory: Metrics for TemporalForest version 0.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TemporalForest

0.1.4

Network-Guided Temporal Forests for Feature Selection in High-Dimensional Longitudinal Data

0packages depend

3.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Sisi ShaoFirst published 2025-12-221 releasesCRAN page ↗GitHub ↗

Implements the Temporal Forest algorithm for feature selection in high-dimensional longitudinal data. The method combines time-aware network construction via weighted gene co-expression network analysis (WGCNA), module-based feature screening, and stability selection using tree-based models. This package provides tools for reproducible longitudinal analysis, closely following the methodology described in Shao, Moore, and Ramirez (2025) https://github.com/SisiShao/TemporalForest.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("TemporalForest", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("SisiShao/TemporalForest")

Development version from SisiShao/TemporalForest. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-temporalforest

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 4.4 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

83%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 262 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 83%
Documented parameters: 100%
Return-value docs: 100%
References docs: 11%

Downloads

3.3K

CRAN downloads in the past year

Rank #9,454 · ~9/day · ~275/mo

Releases R versions

Daily download trend is not available in this view yet.

19430 days

99590 days

3.3K1 year

Compare downloads with other packages →

Also on47 r2u

Repository

GitHub ↗ sisishao/temporalforest

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-12-22

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/sisishao/temporalforest on 2026-08-16.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (8)

WGCNA dynamicTreeCut flashClust glmertree partykitstatsgraphicsgrDevices

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown igraphMatrixMASS

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Sisi Shao

Author, Maintainer

Authors (3)

Sisi Shao

Author, Maintainer

Jason H. Moore

Author

Christina M. Ramirez

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.4Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-12-22
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 3.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TemporalForest")

Format

Shao, S., Moore, J. H., & Ramirez, C. M. (2025). TemporalForest: Network-Guided Temporal Forests for Feature Selection in High-Dimensional Longitudinal Data (Version 0.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.TemporalForest

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TemporalForest version 0.1.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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