R Observatory: Metrics for coreheat version 0.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

coreheat

0.3.2Package record

Correlation Heatmaps

0packages depend

1.9Kdownloads / year

–test coverage

12/13flavors OK

Overview

About

Maintained by Vidal FeyCRAN page ↗

Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default. The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.

Install

R (CRAN)Ubuntu (r2u)

install.packages("coreheat", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-coreheat

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Check messages

ERRORwhether package can be installedr-oldrel-macos-arm64

Installation failed.
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/coreheat.Rcheck/00install.out’ for details.

CRAN check page ↗

Slowest check: 10.1 min · r-release-macos-x86_64

Status changes

ERROR12 OK, 1 ERRORNow
ERROR10 OK, 2 NOTE, 2 ERROR2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.2

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5 (1 internal)includes a package overview page
Examples that run: 100%1 run in a plain check
Exported functions with examples: 50%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 40%

Vignettes (1)

coreheat-vignette HTML

How these are measured

Downloads

1.9K

CRAN downloads in the past year

Rank #17,551 · ~5/day · ~158/mo

Releases R versions

Daily download trend is not available in this view yet.

24830 days

73090 days

1.9K1 year

Compare downloads with other packages →

Also on123 r2u

How downloads are counted

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing coreheat adds 69 packages (36 with compiled code, 59 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB. 7 more not on CRAN are not measured.

Depends (1)

Biobase

Imports (7)

WGCNA heatmapFlex convertidmethodsgraphicsgrDevicesrappdirs

LinkingTo (0)

none

Suggests (5)

rmarkdown knitr BiocManager org.Hs.eg.db org.Mm.eg.db

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Vidal Fey

Author, Maintainer since 0.2.2 (2021)

Henri Sara

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2026-02-09
0.3.2Latest
record
2026-02-09 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2021-12-13
check problems were not corrected in time
0.2.2
record
2021-09-19
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-19
Total releases: 2 / 5 yrs
License: GPL-3 OSI
Download size: 3.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("coreheat")

Format

Fey, V., & Sara, H. (2026). coreheat: Correlation Heatmaps (Version 0.3.2) [Computer software]. https://doi.org/10.32614/CRAN.package.coreheat

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for coreheat version 0.3.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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