OmopSketch

1.1.0

Characterise Tables of an OMOP Common Data Model Instance

4packages depend

6.2Kdownloads / year

91.9%test coverage

13/13checks pass

Overview

About

Maintained by Cecilia CampanileFirst published 2024-09-2615 releasesCRAN page ↗GitHub ↗

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OmopSketch", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("OHDSI/OmopSketch")

Development version from OHDSI/OmopSketch. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omopsketch

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OmopSketch

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OmopSketch

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 11.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.55

91.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 494 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 7%
Documented parameters: 97%
Return-value docs: 97%
References docs: 0%

Downloads

6.2K

CRAN downloads in the past year

Rank #4,336 · ~17/day · ~516/mo

Releases R versions

Daily download trend is not available in this view yet.

73230 days

2.1K90 days

6.2K1 year

Compare downloads with other packages →

Also on255 r2u22 autocran

Repository

GitHub ↗ ohdsi/omopsketch

4Stars

3Forks

11Open issues

1Open PRs

13Releases

1,318Commits

8Contributors

License Apache-2.0 · 1,318 commits · Last activity 2026-07-12 · 0% stars, 30d

Stars over time

2025-04-11 · 32026-07-07 · 4

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/ohdsi/omopsketch on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

40 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (12)

cli clock CohortConstructor dplyr lifecycle omopgenerics PatientProfiles purrr rlang stringr tibble tidyr

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

4direct

0indirect

PhenotypeR OmopConstructor OmopOnSpark OmopViewer

Code & Tests

People & History

People (6)

Maintainer (1)

Cecilia Campanile

Author, Maintainer · added in 0.2.0

Authors (6)

Cecilia Campanile

Author, Maintainer · added in 0.2.0

Marta Alcalde-Herraiz

Author

Author

Author

Author

Author

Package Timeline

15 releases. Pick two to compare their code metrics. R releases are shown for context.

1.1.0Latest
2026-06-16 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.1
2026-02-06 · diff ↗
1.0.0
2025-11-19 · diff ↗
0.5.1
2025-06-19 · diff ↗
0.5.0
2025-06-18 · diff ↗
0.4.0
2025-05-15 · diff ↗
0.3.2
2025-04-14 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.3.1
2025-03-17 · diff ↗
0.3.0
2025-03-04 · diff ↗
0.2.2
2025-01-28 · diff ↗
0.2.1
2025-01-16 · diff ↗
0.2.0
2025-01-08 · diff ↗
0.1.2
2024-11-12 · diff ↗
0.1.1
2024-10-16 · diff ↗

Show 4 earlier events

unarchivedReturned to CRAN
2024-10-15
archivedRemoved from CRAN
2024-10-14
issues were not corrected in time
0.1.0
2024-09-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-09-26
Total releases: 15 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →