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primerTree

Visually Assessing the Specificity and Informativeness of Primer Pairs

v1.1.0 · Oct 3, 2025 · GPL-2

Description

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies directlabels gridExtra ape foreach ggplot2 httr httr2 lubridate plyr reshape2 scales stringr XML primerTree

Version History

new 1.1.0 Mar 10, 2026
updated 1.1.0 ← 1.0.6 diff Oct 2, 2025
updated 1.0.6 ← 1.0.5 diff Apr 4, 2022
updated 1.0.5 ← 1.0.4 diff Jan 22, 2020
updated 1.0.4 ← 1.0.3 diff Dec 18, 2018
updated 1.0.3 ← 1.0.1 diff Jan 11, 2016
updated 1.0.1 ← 1.0.0 diff Jun 8, 2014
new 1.0.0 Oct 3, 2013