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primerTree

Visually Assessing the Specificity and Informativeness of Primer Pairs

v1.1.0 · Oct 3, 2025 · GPL-2

Description

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

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13 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies directlabels gridExtra ape foreach ggplot2 httr httr2 lubridate plyr reshape2 scales stringr XML primerTree

Version History

8 tracked
new 1.1.0 Mar 10, 2026
updated 1.1.0 ← 1.0.6 diff Oct 2, 2025
updated 1.0.6 ← 1.0.5 diff Apr 4, 2022
updated 1.0.5 ← 1.0.4 diff Jan 22, 2020
updated 1.0.4 ← 1.0.3 diff Dec 18, 2018
updated 1.0.3 ← 1.0.1 diff Jan 11, 2016
updated 1.0.1 ← 1.0.0 diff Jun 8, 2014
new 1.0.0 Oct 3, 2013