Q4 2009 in CRAN

Final

Part of 2009.

New packages

514

Updated

Archived

+29

Net growth

New packages (60+)

intamapInteractive Interactive Add-on Functionality for 'intamap'	2009-10-02
fds Functional Data Sets	2009-10-08
bcv Cross-Validation for the SVD (Bi-Cross-Validation)	2009-10-15
adaptTest Adaptive Two-Stage Tests	2009-10-16
season Seasonal Analysis of Health Data	2009-10-20
textcat N-Gram Based Text Categorization	2009-10-21
SAFD Statistical Analysis of Fuzzy Data	2009-10-23
forensim Interpretation of Forensic DNA Mixtures	2009-10-26
ptw Parametric Time Warping	2009-10-27
SkewHyperbolic The Skew Hyperbolic Student t-Distribution	2009-10-28
hyperSpec Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)	2009-10-28
venneuler Venn and Euler Diagrams	2009-10-28
Guerry Maps, Data and Methods Related to Guerry (1833) "Moral Statistics of France"	2009-10-30
equate Observed-Score Linking and Equating	2009-11-01
phylobase Base Package for Phylogenetic Structures and Comparative Data	2009-11-01
distrEllipse S4 Classes for Elliptically Contoured Distributions	2009-11-03
optparse Command Line Option Parser	2009-11-03
psychotree Recursive Partitioning Based on Psychometric Models	2009-11-04
adephylo Exploratory Analyses for the Phylogenetic Comparative Method	2009-11-05
dclone Data Cloning and MCMC Tools for Maximum Likelihood Methods	2009-11-05
Bolstad2 Bolstad Functions	2009-11-06
cusp Cusp-Catastrophe Model Fitting Using Maximum Likelihood	2009-11-06
topicmodels Topic Models	2009-11-06
MNM Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks	2009-11-09
stringr Simple, Consistent Wrappers for Common String Operations	2009-11-09
r4ss R Code for Stock Synthesis	2009-11-10
ebdbNet Empirical Bayes Estimation of Dynamic Bayesian Networks	2009-11-11
histogram Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins	2009-11-12
HistData Data Sets from the History of Statistics and Data Visualization	2009-11-13
Sleuth2 Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"	2009-11-13
BoolNet Construction, Simulation and Analysis of Boolean Networks	2009-11-16
ibr Iterative Bias Reduction	2009-11-16
plsdof Degrees of Freedom and Statistical Inference for Partial Least Squares Regression	2009-11-16
polySegratio Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids	2009-11-17
polySegratioMM Bayesian Mixture Models for Marker Dosage in Autopolyploids	2009-11-17
testthat Unit Testing for R	2009-11-17
VPdtw Variable Penalty Dynamic Time Warping	2009-11-18
miniGUI Tcl/Tk Quick and Simple Function GUI	2009-11-18
gamlss.add Extra Additive Terms for Generalized Additive Models for Location Scale and Shape	2009-11-22
highlight Syntax Highlighter	2009-11-22
ncvreg Regularization Paths for SCAD and MCP Penalized Regression Models	2009-11-22
NMF Algorithms and Framework for Nonnegative Matrix Factorization (NMF)	2009-11-23
PBSadmb ADMB for R Using Scripts or GUI	2009-11-25
formula.tools Programmatic Utilities for Manipulating Formulas, Expressions, Calls, Assignments and Other R Objects	2009-11-29
crmn CCMN and Other Normalization Methods for Metabolomics Data	2009-11-30
sparcl Perform Sparse Hierarchical Clustering and Sparse K-Means Clustering	2009-12-02
NMFN Non-Negative Matrix Factorization	2009-12-03
extremevalues Univariate Outlier Detection	2009-12-03
Boruta Wrapper Algorithm for All Relevant Feature Selection	2009-12-06
Bergm Bayesian Exponential Random Graph Models	2009-12-07
doMPI Foreach Parallel Adaptor for the Rmpi Package	2009-12-09
BoSSA A Bunch of Structure and Sequence Analysis	2009-12-11
bibtex Bibtex Parser	2009-12-11
rngWELL Toolbox for WELL Random Number Generators	2009-12-11
BioStatR Initiation à La Statistique Avec R	2009-12-14
bfast Breaks for Additive Season and Trend	2009-12-14
openintro Datasets and Supplemental Functions from 'OpenIntro' Textbooks and Labs	2009-12-14
CCP Significance Tests for Canonical Correlation Analysis (CCA)	2009-12-17
SampleSizeProportions Calculating Sample Size Requirements when Estimating the Difference Between Two Binomial Proportions	2009-12-17
batch Batching Routines in Parallel and Passing Command-Line Arguments to R	2009-12-17

Archived / removed

Why

16 reason not recorded
4 Archived on 2022-03-06 as check problems were not corrected in time.
1 Archived on 2012-01-31 at the request of the maintainer.
1 Archived on 2013-03-23: no response nor update was received after a request to clean up WARNINGs.
1 Archived on 2013-06-01: no response nor update was received after a request to clean up after the 'odesolve' archival.
1 Archived on 2013-12-12 at the request of the maintainer.
1 Archived on 2013-12-18 as requested by the maintainer <MSchmidberger@freenet.de>.
1 Archived on 2013-12-21 as maintainer address <j.zhang@dkfz.de> bounced.

accuracy No response from the maintainer after several tries asking to fix Warnings that persisted for more than half a year. Therefore the package was orphaned and archived.	2009-12-28
nytR	2009-12-28
marginalmodelplots Archived on 2014-12-07 as maintainer address <aredd@stat.tamu.edu> bounced.	2009-12-16
r2lUniv	2009-12-07
datamap Archived on 2022-03-06 as check problems were not corrected in time.	2009-12-03
RScaLAPACK	2009-11-30
WINRPACK Archived on 2012-01-31 at the request of the maintainer.	2009-11-29
LogitNet Archived on 2022-03-06 as check problems were not corrected in time.	2009-11-25
twopartqtl	2009-11-25
xterm256 Orphaned and archived on 2012-06-18 as the original maintainer, 'Romain Francois <romain@r-enthusiasts.com>', is unresponsive.	2009-11-23
dvfBm Archived on 2018-05-03 as check problems were not corrected despite reminders.	2009-11-22
waveclock	2009-11-20
marelacTeaching	2009-11-19
DRI Archived on 2014-11-24 as maintainer address <ksalari@stanford.edu> bounced.	2009-11-17
corcounts Archived on 2018-03-25 as maintainer's email address bounced.	2009-11-13
CircSpatial	2009-11-05
MFDF Archived on 2013-06-01: no response nor update was received after a request to clean up after the 'odesolve' archival.	2009-11-04
MCMCtGARCH	2009-11-02
MCMCtGARCHM	2009-11-02
MCMCtNARCH	2009-11-02
gcolor Archived on 2013-03-23: no response nor update was received after a request to clean up WARNINGs.	2009-10-30
rWMBAT	2009-10-29
DICOM	2009-10-28
ant Orphaned on 2012-07-18 as the original maintainer, 'Romain Francois <francoisromain@free.fr>', is unresponsive.	2009-10-28
DesignPatterns Archived on 2013-12-21 as maintainer address <j.zhang@dkfz.de> bounced.	2009-10-27
rela Archived on 2022-03-06 as check problems were not corrected in time.	2009-10-27
stochmod Archived on 2013-12-12 at the request of the maintainer.	2009-10-26
RelativeRisk Orphaned on 2014-02-11: the maintainer is unresponsive.	2009-10-20
GLMMarp	2009-10-18
grouped Archived on 2022-03-06 as check problems were not corrected in time.	2009-10-12
integrativeMEdata	2009-10-12
EffectiveDose	2009-10-11
packClassic Archived on 2022-02-20 as email to the maintainer is undeliverable.	2009-10-11
PKtools Archived on 2014-12-05 as requested by the maintainer <sblanchard@coh.org>.	2009-10-08
atmi	2009-10-07
gamesNws Archived on 2013-12-18 as requested by the maintainer <MSchmidberger@freenet.de>.	2009-10-06

Notable

Major version jumps

DEoptim 1.3-3→2.0-0 FrF2 0.97-10→1.0 choplump 0.9-3→1.0 rrcov 0.5-02→1.0-00 isotone 0.8-7→1.0-0 qcc 1.3→2.0 PerformanceAnalytics 0.9.7.1→1.0.0 binGroup 0.3-2→1.0-3 YieldCurve 1.0→2.0 mlegp 2.2.6→3.1.0 spls 1.1-0→2.1-0 dclone 0.9-0→1.0-0 diffusionMap 0.0-2→1.0-0 aspace 1.2→2.2 Bchron 2.1→3.0 MCMCglmm 1.13→2.00 difR 1.1→2.0 psy 0.7→1.0

First-time CRAN authors

Jon Skoien Michal Burdukiewicz ×19 Seyed Morteza Najibi Marc Vandemeulebroecke Peter Baker ×4 Adrian Barnett ×3 Oliver Hughes Johannes Rauch Oyvind Bleka Hinda Haned Maarten Kruijver ×6 Tom Bloemberg Paul Eilers ×5 Jan Gerretzen Hans Wouters Claudia Beleites ×4 Alois Bonifacio Marcel Dahms Björn Egert Simon Fuller