BoolNet

Construction, Simulation and Analysis of Boolean Networks

v2.1.9 · Oct 2, 2023 · Artistic-2.0

Description

Functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks <doi:10.1093/bioinformatics/btq124>.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	97.8s
r-devel-linux-x86_64-debian-gcc	NOTE	70.9s
r-devel-linux-x86_64-fedora-clang	NOTE	146.1s
r-devel-linux-x86_64-fedora-gcc	NOTE	169.9s
r-devel-macos-arm64	NOTE	29s
r-devel-windows-x86_64	NOTE	159s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	74s
r-oldrel-windows-x86_64	NOTE	161s
r-patched-linux-x86_64	NOTE	95.4s
r-release-linux-x86_64	NOTE	87.9s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	93s
r-release-windows-x86_64	NOTE	140s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state.
       |                                                                                                                                                                                                                                                                                                                                            
...[truncated]...

checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup?
   131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies.
       |    ^
checkRd: (-1) testNetworkProperties.Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

Additional Issues

musl Details →

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup?
    23 |   Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behavi
...[truncated]...
Rd:140: Lost braces
   140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped.
       |     ^

Reverse Dependencies (5)

depends

BoolFilter

imports

diffeRenTES

suggests

BiTrinA Binarize pastboon

Dependency Network

Version History

new 2.1.9 Mar 10, 2026

updated 2.1.9 ← 2.1.8 diff Oct 1, 2023

updated 2.1.8 ← 2.1.7 diff Feb 26, 2023

updated 2.1.7 ← 2.1.5 diff Sep 3, 2022

updated 2.1.5 ← 2.1.4 diff Apr 15, 2019

updated 2.1.4 ← 2.1.3 diff Jun 6, 2018

updated 2.1.3 ← 2.1.1 diff Nov 20, 2016

updated 2.1.1 ← 2.1.0 diff Feb 24, 2015

updated 2.1.0 ← 2.0.2 diff Feb 22, 2015

updated 2.0.2 ← 2.0.1 diff Dec 10, 2014

updated 2.0.1 ← 2.0 diff Aug 25, 2014

updated 2.0 ← 1.63 diff Jul 16, 2014

updated 1.63 ← 1.62 diff Mar 30, 2014

updated 1.62 ← 1.61 diff Dec 2, 2013

updated 1.61 ← 1.60 diff Mar 19, 2013

updated 1.60 ← 1.51 diff Dec 11, 2012

updated 1.51 ← 1.50 diff Jun 10, 2012

updated 1.50 ← 1.46 diff Apr 9, 2012

updated 1.46 ← 1.45 diff Jan 16, 2012

updated 1.45 ← 1.44 diff Nov 21, 2011