Q1 2010 in CRAN

Final

Part of 2010.

New packages

381

Updated

Archived

+48

Net growth

New packages (60+)

xlsx Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files	2010-01-03
xlsxjars Package Required POI Jars for the xlsx Package	2010-01-03
asbio A Collection of Statistical Tools for Biologists	2010-01-04
pyramid Draw Population Pyramid	2010-01-06
rworldmap Mapping Global Data	2010-01-06
HMM Hidden Markov Models	2010-01-10
samplesize Sample Size Calculation for Various t-Tests and Wilcoxon-Test	2010-01-10
GAMens Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification	2010-01-11
scrapeR These Functions Fetch and Extract Text Content from Specified Web Pages	2010-01-11
itertools Iterator Tools	2010-01-14
mvabund Statistical Methods for Analysing Multivariate Abundance Data	2010-01-14
logging R Logging Package	2010-01-15
epinet Epidemic/Network-Related Tools	2010-01-17
RPPanalyzer Reads, Annotates, and Normalizes Reverse Phase Protein Array Data	2010-01-18
unmarked Models for Data from Unmarked Animals	2010-01-21
SQN Subset Quantile Normalization	2010-01-22
recommenderlab Lab for Developing and Testing Recommender Algorithms	2010-01-23
Unicode Unicode Data and Utilities	2010-01-26
lmPerm Permutation Tests for Linear Models	2010-01-26
rEMM Extensible Markov Model for Modelling Temporal Relationships Between Clusters	2010-01-26
exactci Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases	2010-01-27
fftw Fast FFT and DCT Based on the FFTW Library	2010-01-29
phyclust Phylogenetic Clustering (Phyloclustering)	2010-01-29
GGally Extension to 'ggplot2'	2010-02-01
RH2 DBI/RJDBC Interface to H2 Database	2010-02-01
RProtoBuf R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)	2010-02-02
symmoments Symbolic Central and Noncentral Moments of the Multivariate Normal Distribution	2010-02-02
GWRM Generalized Waring Regression Model for Count Data	2010-02-03
sphet Estimation of Spatial Autoregressive Models with and without Heteroskedastic Innovations	2010-02-03
ipw Estimate Inverse Probability Weights	2010-02-04
powerMediation Power/Sample Size Calculation for Mediation Analysis	2010-02-04
dae Functions Useful in the Design and ANOVA of Experiments	2010-02-05
PropCIs Various Confidence Interval Methods for Proportions	2010-02-06
geosphere Spherical Trigonometry	2010-02-09
stoichcalc R Functions for Solving Stoichiometric Equations	2010-02-09
RFLPtools Tools to Analyse RFLP Data	2010-02-10
solaR Radiation and Photovoltaic Systems	2010-02-10
BTSPAS Bayesian Time-Stratified Population Analysis	2010-02-11
rangeMapper A Platform for the Study of Macro-Ecology of Life History Traits	2010-02-11
tourr Tour Methods for Multivariate Data Visualisation	2010-02-11
DiceDesign Designs of Computer Experiments	2010-02-18
isopam Clustering of Sites with Species Data	2010-02-18
tsne T-Distributed Stochastic Neighbor Embedding for R (t-SNE)	2010-02-21
BradleyTerry2 Bradley-Terry Models	2010-02-23
DiceKriging Kriging Methods for Computer Experiments	2010-02-23
TreeSim Simulating Phylogenetic Trees	2010-02-23
dagR Directed Acyclic Graphs: Analysis and Data Simulation	2010-02-24
ncdf4 Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files	2010-02-24
oro.dicom Rigorous - DICOM Input / Output	2010-02-28
vcdExtra 'vcd' Extensions and Additions	2010-02-28
DistributionUtils Distribution Utilities	2010-03-01
GeneralizedHyperbolic The Generalized Hyperbolic Distribution	2010-03-01
random.polychor.pa A Parallel Analysis with Polychoric Correlation Matrices	2010-03-01
saws Small-Sample Adjustments for Wald Tests Using Sandwich Estimators	2010-03-01
apcluster Affinity Propagation Clustering	2010-03-02
oro.nifti Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output	2010-03-04
Rsolnp General Non-Linear Optimization	2010-03-05
MAd Meta-Analysis with Mean Differences	2010-03-07
minqa Derivative-Free Optimization Algorithms by Quadratic Approximation	2010-03-07
ordinal Regression Models for Ordinal Data	2010-03-07

Archived / removed

Why

25 reason not recorded
3 Archived on 2022-03-06 as check problems were not corrected in time.
2 Archived on 2013-03-23: no response nor update was received after a request to clean up WARNINGs.
1 Archived on 2012-10-31: it has been subsumed into 'wavethresh'.
1 Archived on 2013-12-21 as maintainer address <wei.dou@yale.edu> bounced.
1 Archived on 2014-08-30 as new/delete mismatches were not corrected.
1 Archived on 2015-03-27 as had not been updated for current versions of SPRNG, for 5 years.
1 Archived on 2021-06-08 as check issues were not corrected in time.

CoCo	2010-03-19
CoCoCg	2010-03-19
CoCoGraph	2010-03-19
cthresh Archived on 2012-10-31: it has been subsumed into 'wavethresh'.	2010-03-17
agilp This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/agilp.html>.	2010-03-15
DiagnosisMed	2010-03-09
rsprng Archived on 2015-03-27 as had not been updated for current versions of SPRNG, for 5 years.	2010-03-09
dynGraph	2010-03-08
CCMtools	2010-02-26
RGtk2DfEdit	2010-02-26
tradeCosts	2010-02-19
farmR	2010-02-16
ic50 Archived on 2022-03-06 as check problems were not corrected in time.	2010-02-16
oosp	2010-02-13
ZIGP	2010-02-11
epsi	2010-02-08
fUtilities	2010-02-08
log10	2010-02-07
mimR	2010-02-07
stam Archived on 2022-03-06 as check problems were not corrected in time.	2010-02-07
FunctSNP	2010-02-05
pARccs	2010-02-05
JJcorr	2010-02-02
SDDA Archived on 2014-08-30 as new/delete mismatches were not corrected.	2010-02-02
dynamicGraph Archived on 2021-06-08 as check issues were not corrected in time.	2010-02-01
fisheyeR Archived on 2022-03-06 as check problems were not corrected in time.	2010-01-28
boolean Archived on 2013-03-23: no response nor update was received after a request to clean up WARNINGs.	2010-01-24
edtdbg	2010-01-22
GRASS	2010-01-20
halp	2010-01-20
nnclust	2010-01-20
mprobit Archived on 2013-03-23: no response nor update was received after a request to clean up WARNINGs.	2010-01-12
nnDiag	2010-01-11
urn	2010-01-11
MTSKNN Archived on 2013-12-21 as maintainer address <wei.dou@yale.edu> bounced.	2010-01-04
marginTree	2010-01-04

Notable

Major version jumps

aspect 0.8-1→1.0-0 mlbench 1.1-6→2.0-0 exact2x2 0.9-3.1→1.0-0 mboost 1.1-4→2.0-0 metafor 0.5-7→1.0-1 picante 0.7-2→1.0-0 fxregime 0.3-1→1.0-0 flashClust 0.10-1→1.00 ncvreg 1.0→2.0 AquaEnv 0.8-2→1.0 tmvtnorm 0.9-2→1.0-1 extremevalues 1.0→2.0 R2HTML 1.59-1→2.0.0 pcalg 0.1-9→1.0-0 phangorn 0.99-6→1.0-0 equate 0.1-1→1.0-0

First-time CRAN authors

Cole Arendt ×5 Adrian Dragulescu Adrian A. Dragulescu Ken Aho ×3 Andy South ×3 Lin Himmelmann Julian Byrnes Ulrike Naumann ×2 Jenni Niku ×2 Ian Renner ×2 Yi Wang David Warton ×5 John Wilshire Stephen Wright Ralph dos Santos Silva Walerian Sokolowski Chris Groendyke David Welch Chris Baker Richard Chandler ×3