R Observatory: Metrics for pRolocdata version 1.50.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

pRolocdata

Bioc current

Data accompanying the pRoloc package

v1.50.0 · experiment · GPL-2

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

Mass-spectrometry based spatial proteomics data sets and protein complex separation data. Also contains the time course expression experiment from Mulvey et al. 2015.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

5 2 exported

Complexity

1.2 avg / 2 max

Call network

5 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

3,120

Files

259

Compiled share

0%

Has compiled src

No

Language breakdown

R 49 (1.6%)Tests 17 (0.5%)Docs 3,054 (97.9%)

API

Exported functions

2

Internal functions

3

Testing & CI

Has tests

Yes

Test-to-code ratio

0.35

testthat edition

–

CI present

Yes

CI type

["travis"]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.6.3

System requirements

–

C++ standard

–

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

26

First release

2013-12-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

2

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 2,350 wordsVignettesNopkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 50%
References docs: 72%

Topics

ExperimentData

ExperimentData › OrganismData › Homo_sapiens_Data

ExperimentData › TechnologyData › MassSpectrometryData

ExperimentData › OrganismData › Arabidopsis_thaliana_Data

ExperimentData › OrganismData › Drosophila_melanogaster_Data

ExperimentData › OrganismData › Mus_musculus_Data

ExperimentData › SpecimenSource › StemCell

ExperimentData › SpecimenSource › Proteome

Depended on by (5)

Bioconductor (5)

bandle MSnbase pRoloc pRolocGUI RforProteomics

People

Lisa Breckels maintainer author
Oliver Crook author
Laurent Gatto author

At a glance

Version: 1.50.0
Category: experiment
License: GPL-2
Requires R: ≥ 4.6
Maintainer: Lisa Breckels
Entered: 2.13 · Oct 15, 2013
Current: 3.23 · Apr 29, 2026

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.6.3)MSnbaseBioc

Imports

BiobaseBiocutils

Suggests

pRoloc (>= 1.13.8)BioctestthatSummarizedExperimentBioc

Source & history

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pRolocdata")

Format

Breckels, L., Crook, O., & Gatto, L. (2026). pRolocdata: Data accompanying the pRoloc package (Version 1.50.0) [Computer software]. https://bioconductor.org/packages/pRolocdata

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pRolocdata version 1.50.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →