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pRolocGUI

Bioc current

Interactive visualisation of spatial proteomics data

v2.22.0 · software · GPL-2

Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

12 1 exported

Complexity

15.1 avg / 61 max

Call network

12 nodes / 19 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

3,721

Files

37

Compiled share

0%

Has compiled src

No

Language breakdown

R 3,106 (83.5%)Tests 23 (0.6%)Docs 141 (3.8%)Vignettes 451 (12.1%)

API

Exported functions

1

Internal functions

11

Testing & CI

Has tests

Yes

Test-to-code ratio

0.01

testthat edition

3

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

22.7%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.1.0

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

24

First release

2015-03-21

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

20

LOC over versions

v3.0: 4,125 LOCv3.1: 4,126 LOCv3.2: 4,631 LOCv3.3: 1,969 LOCv3.4: 2,018 LOCv3.5: 2,652 LOCv3.6: 2,660 LOCv3.7: 2,673 LOCv3.8: 2,673 LOCv3.9: 2,673 LOCv3.10: 2,673 LOCv3.11: 2,673 LOCv3.12: 3,370 LOCv3.13: 3,370 LOCv3.14: 3,370 LOCv3.15: 3,758 LOCv3.16: 3,685 LOCv3.17: 3,692 LOCv3.18: 3,693 LOCv3.19: 3,693 LOCv3.20: 3,717 LOCv3.21: 3,717 LOCv3.22: 3,717 LOCv3.23: 3,721 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 675 wordsVignettesYes · dynamicpkgdown siteYesNEWSYes · 67% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
0%
References docs
0%

Topics

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("pRolocGUI")
Breckels, L., Gatto, L., & Naake, T. (2026). pRolocGUI: Interactive visualisation of spatial proteomics data (Version 2.22.0) [Computer software]. https://bioconductor.org/packages/pRolocGUI

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for pRolocGUI version 2.22.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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