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hpar

Bioc current

Human Protein Atlas in R

v1.54.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.11 · Oct 3, 2012

Current · Requires R 4.6

1.0 In 28 of 49 releases 3.23

Description

The hpar package provides a simple R interface to and data from the Human Protein Atlas project.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

9 5 exported

Complexity

1.3 avg / 4 max

Call network

9 nodes / 5 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

821

Files

26

Compiled share

0%

Has compiled src

No

Language breakdown

R 201 (24.5%)Tests 32 (3.9%)Docs 150 (18.3%)Vignettes 438 (53.3%)

API

Exported functions

5

Internal functions

4

Testing & CI

Has tests

Yes

Test-to-code ratio

0.16

testthat edition

–

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.5.0

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

28

First release

2013-01-15

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

2

LOC over versions

v2.11: 822 LOCv2.12: 822 LOCv2.13: 822 LOCv2.14: 822 LOCv3.0: 817 LOCv3.1: 796 LOCv3.2: 864 LOCv3.3: 864 LOCv3.4: 921 LOCv3.5: 885 LOCv3.6: 885 LOCv3.7: 886 LOCv3.8: 886 LOCv3.9: 886 LOCv3.10: 886 LOCv3.11: 885 LOCv3.12: 945 LOCv3.13: 945 LOCv3.14: 969 LOCv3.15: 969 LOCv3.16: 969 LOCv3.17: 821 LOCv3.18: 821 LOCv3.19: 821 LOCv3.20: 821 LOCv3.21: 821 LOCv3.22: 821 LOCv3.23: 821 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 48 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
100%
References docs
0%

Topics

Software › ResearchField › Proteomics
Software › ResearchField › CellBiology
Software › Infrastructure › DataImport
Software › ResearchField › FunctionalGenomics
Software › ResearchField › SystemsBiology
Software › Technology › ExperimentHubSoftware

Depended on by (4)

Bioconductor (4)

MetaboSignal pRoloc RforProteomics HPAStainR

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