Bioconductor Packages

DiffLogo: A comparative visualisation of biooligomer motifs

Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Data package for JASPAR 2016

Learning from DNA to Predict Enhancers

Obtain total affinity and occupancies for binding site matrices on a given sequence

An Annotated Collection of Protein-DNA Binding Sequence Motifs

PWM enrichment analysis

RNA Centric Annotation System

RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions

Functions for analyzing SELEX-seq data

SNP Effect Matrix Pipeline in R

Software Package for Transcription Factor Binding Site (TFBS) Analysis

Affinity test for identifying regulatory SNPs

Prediction of intronic splicing branchpoints

epiSeeker: an R package for Annotation, Comparison and Visualization of multi-omics epigenetic data

Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning

Linking Advanced TCR Python Pipelines and Hugging Face Models in R

motif matching, comparison, and de novo discovery using the MEME Suite

Binned Motif Enrichment Analysis and Visualization

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Perform key tests for binding motifs in sequence data

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites

Fast Motif Matching in R

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Import, Modify, and Export Motifs with R