metavizr

Bioc removed

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization

v1.24.0 · MIT + file LICENSE

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Release Lineage

Entered 3.5 · Apr 25, 2017

Removed after 3.17 · Apr 26, 2023

1.0 In 13 of 49 releases 3.23

Description

This package provides Websocket communication to the metaviz web app (http://metaviz.cbcb.umd.edu) for interactive visualization of metagenomics data. Objects in R/bioc interactive sessions can be displayed in plots and data can be explored using a facetzoom visualization. Fundamental Bioconductor data structures are supported (e.g., MRexperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.

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Topics

Software › WorkflowStep › Visualization

Software › Infrastructure

Software › Infrastructure › GUI

Software › ResearchField › Metagenomics

Software › ResearchField › ImmunoOncology

People

Hector Corrada Bravo maintainer author
Florin Chelaru author
Jayaram Kancherla author
Joseph Paulson author
Justin Wagner author

At a glance

Version: 1.24.0
License: MIT + file LICENSE
Requires R: ≥ 4.3
Entered: 3.5 · Apr 25, 2017
Last seen: 3.17 · Apr 26, 2023

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 3.4)metagenomeSeq (>= 1.17.1)Biocmethodsdata.tableBiobaseBiocdigest

Imports

epivizrBiocepivizrDataBiocepivizrServerBiocepivizrStandaloneBiocveganGenomeInfoDbBiocphyloseqBiochttr

Suggests

knitrBiocStyleBiocmatrixStatsmsd16s (>= 0.109.1)Biocetec16sBioctestthat gssExperimentHubBioctidyr rmarkdown

Source & history

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