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ArrayTools

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geneChip Analysis Package

v1.52.0 · LGPL (>= 2.0)
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Release Lineage

Entered 2.3 · Oct 22, 2008

Removed after 3.13 · May 20, 2021

1.0 In 26 of 49 releases 3.23

Description

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

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Topics

Software › Technology › Microarray
Software › Technology › Microarray › OneChannel
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Preprocessing
Software › StatisticalMethod
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › Annotation
Software › WorkflowStep › ReportWriting
Software › WorkflowStep › Visualization

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