Bioconductor Packages

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

R-side access to BioPlex protein-protein interaction data

Annotations for City of Hope CpG Island Analysis Pipeline

ChIPXpress Pre-built Databases

Chimp and human brain data package

Orchestrating Blood Radiation Transcriptomic Data

Drug versus Disease Data

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Disease Datasets from GEO

KEGG Disease Datasets from GEO

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

M3Drop Example Data

Experimental Data Package: MAQCsubset

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Ob/ob Mice Data on Normal and High Fat Diet

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Supporting datasets for SBGNview package

Integrating Multi-modal Single Cell Experiment datasets

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Connectivity Map (version 2) Data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Auxillary data for gage package

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]