RNAmodR
Bioc currentDetection of post-transcriptional modifications in high throughput sequencing data
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
RNAmodR provides classes and workflows for loading/aggregation data from high througput sequencing aimed at detecting post-transcriptional modifications through analysis of specific patterns. In addition, utilities are provided to validate and visualize the results. The RNAmodR package provides a core functionality from which specific analysis strategies can be easily implemented as a seperate package.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
243 22 exported
Complexity
2.9 avg / 15 max
Call network
243 nodes / 243 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
15,680
Files
97
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
57
Internal functions
220
Testing
Has tests
Yes
Test-to-code ratio
0.17
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
16%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2020-01-12
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 31 (2 internal)includes a package overview page
- Examples that run
- 96%22 run in a plain check · 1 never run
- Exported functions with examples
- 88%
- Documented parameters
- 64%
- Return-value docs
- 100%
- Help pages citing references
- 6%
Repository practices
6 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/felixernst/rnamodr on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2025-09-23 · The repository has a site deploy workflow
Datasets
Topics
Depended on by (3)
Bioconductor (3)
People
- Felix G.M. Ernst author maintainer
- Denis L.J. Lafontaine contributor funder
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RNAmodR")The package provides a citation file that builds its entry when R runs it. Run citation() to see it.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.