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maits

MAITs data set, RNASeq

Bundled with MAST · exported, loads via data()

Class
list
Elements
3
Missing
0
Format
rda · xz
version 2 · 1.7 MB
File
data/maits.RData
Fingerprint
8b35de58
Format documented
Yes
Source
Source not stated
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
3
Nesting depth
2
Element length
3 – 1,564,992
Total length
1,565,016
Nested rows
16,398
Nested columns
3
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
expressionmat
numeric
63,194
0
0 – 18.7691·96 × 16,302 matrixmean 1.096
Min.
0
1st Qu.
0
Median
0
Mean
1.096
3rd Qu.
0.8319
Max.
18.7691
Std. dev
2.2916
Skewness
2.561
Kurtosis
6.289
Zeros
908,958
Outliers
260,7850 low · 260785 high
fdat
list
3
0
character·16,302 rows nested
Element class
character
Element length
16,302 – 16,302
Total length
48,906
Nested rows
16,302
What is inside it
Element
Type
Distinct
Missing
Summary
primerid
character
16,302
0
1 – 40 characters
entrez
character
15,077
0
1 – 40 characters
symbolid
character
15,077
0
2 – 40 characters
cdat
list
21
0
nested·96 rows nested
Element length
96 – 96
Total length
2,016
Nested rows
96
What is inside it
Element
Type
Distinct
Missing
Summary
wellKey
character
96
0
19 – 21 characters
condition
character
2
0
4 – 6 characters
nGeneOn
integer
95
0
1434 – 11812mean 6905
Min.
1434
1st Qu.
6082.25
Median
7354
Mean
6905.26
3rd Qu.
8799
Max.
11812
Std. dev
2451.37
Skewness
-0.8114
Kurtosis
0.0099
Outliers
88 low · 0 high
libSize
integer
96
0
70203 – 14592681mean 8.259e+6
Min.
70203
1st Qu.
4.71679e+6
Median
9.23663e+6
Mean
8.25939e+6
3rd Qu.
1.24402e+7
Max.
14592681
Std. dev
4.75018e+6
Skewness
-0.5303
Kurtosis
-1.066
PercentToHuman
numeric
67
0
0.03 – 0.906mean 0.7357
Min.
0.03
1st Qu.
0.8122
Median
0.8525
Mean
0.7357
3rd Qu.
0.8922
Max.
0.906
Std. dev
0.2892
Skewness
-1.819
Kurtosis
1.51
Outliers
1616 low · 0 high
MedianCVCoverage
numeric
96
0
0.688 – 3.9008mean 1.6
Min.
0.688
1st Qu.
0.9572
Median
1.2598
Mean
1.5996
3rd Qu.
2.1137
Max.
3.9008
Std. dev
0.758
Skewness
0.961
Kurtosis
0.3929
Outliers
10 low · 1 high
PCRDuplicate
numeric
96
0
0.0368 – 0.9005mean 0.7184
Min.
0.0368
1st Qu.
0.751
Median
0.8214
Mean
0.7184
3rd Qu.
0.8713
Max.
0.9005
Std. dev
0.261
Skewness
-1.806
Kurtosis
1.718
Outliers
1616 low · 0 high
exonRate
numeric
82
0
0.025 – 0.851mean 0.5556
Min.
0.025
1st Qu.
0.4875
Median
0.585
Mean
0.5556
3rd Qu.
0.666
Max.
0.851
Std. dev
0.1933
Skewness
-1.281
Kurtosis
1.632
Outliers
99 low · 0 high
pastFastqc
character
2
0
4 characters
ncells
numeric
1
0
1
ngeneson
numeric
96
0
0.0451 – 0.3708mean 0.2166
Min.
0.0451
1st Qu.
0.1909
Median
0.2307
Mean
0.2166
3rd Qu.
0.2761
Max.
0.3708
Std. dev
0.0769
Skewness
-0.809
Kurtosis
0.0101
Outliers
88 low · 0 high
cngeneson
numeric
96
0
-0.1716 – 0.1541mean -1.503e-17
Min.
-0.1716
1st Qu.
-0.0258
Median
0.0141
Mean
-1.5034e-17
3rd Qu.
0.0594
Max.
0.1541
Std. dev
0.0769
Skewness
-0.809
Kurtosis
0.0101
Outliers
88 low · 0 high
TRAV1
numeric
26
42
0 – 12.2788mean 4.265
Min.
0
1st Qu.
0
Median
0
Mean
4.2646
3rd Qu.
8.6009
Max.
12.2788
Std. dev
4.8007
Skewness
0.3306
Kurtosis
-1.722
Zeros
29
Longest gap
5
TRBV6
numeric
26
42
0 – 12.7839mean 4.514
Min.
0
1st Qu.
0
Median
0
Mean
4.5145
3rd Qu.
10.4338
Max.
12.7839
Std. dev
5.1075
Skewness
0.3458
Kurtosis
-1.72
Zeros
29
Longest gap
5
TRBV4
numeric
7
42
0 – 12.0087mean 0.9677
Min.
0
1st Qu.
0
Median
0
Mean
0.9677
3rd Qu.
0
Max.
12.0087
Std. dev
2.8976
Skewness
2.787
Kurtosis
6.45
Zeros
48
Longest gap
5
TRBV20
numeric
7
42
0 – 12.0495mean 1.248
Min.
0
1st Qu.
0
Median
0
Mean
1.2476
3rd Qu.
0
Max.
12.0495
Std. dev
3.5669
Skewness
2.419
Kurtosis
3.953
Zeros
48
Longest gap
5
alpha
factor
2
66
TRAV122other8
beta
factor
4
55
TRBV621other10TRBV205TRBV45
ac
factor
4
66
TRAV1.Stim13TRAV1.Unstim9other.Unstim7other.Stim1
bc
factor
7
55
TRBV6.Unstim13TRBV6.Stim8other.Stim5TRBV4.Stim5other.Unstim5TRBV20.Unstim3+2 more
Levels
8
Used
7
Unused
1
Rows per level, the 7 commonest of 8
TRBV6.Unstim13TRBV6.Stim8other.Stim5TRBV4.Stim5other.Unstim5TRBV20.Unstim3TRBV20.Stim2
ourfilter
logical
2
0
74 true·22 false

The nested tables do not share one set of columns, so there is no single schema to show.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-283 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.222025-10-293 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.212025-04-153 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.202024-10-293 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.192024-04-303 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.182023-10-243 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.172023-04-253 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.162023-01-223 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.152022-04-263 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.142021-10-263 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.132021-05-193 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.122020-10-273 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.112020-04-273 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.102019-10-293 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.92019-05-023 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.82019-01-163 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.72018-05-093 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.62017-12-223 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.52017-08-313 elementsUnchangedrda · xz
version 2 · 1.7 MB
exact
3.42016-11-223 elements–rda · xz
version 2 · 1.7 MB
exact

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