Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

Browse by topic

4,656

Total Packages

3,810

Current

846

Removed

5

Categories

All (4,656) Software (2,418) Annotation (928) Experiment (436) Workflows (28)

Sub-topics

Clear topics

GeneExpressionWorkflow13

Current releases only – show all

Showing 1–13 of 13 packages

Show255075 100

Package	Category	Version	First Release	Last Release	Status
BP4RNAseq Bioc A babysitter's package for reproducible RNA-seq analysis	workflows	1.22.0	3.12	3.23	current
CAGEWorkflow Bioc A step-by-step guide to analyzing CAGE data using R/Bioconductor	workflows	1.28.0	3.9	3.23	current
EGSEA123 Bioc Easy and efficient ensemble gene set testing with EGSEA	workflows	1.36.0	3.6	3.23	current
ExpHunterSuite Bioc Package for the Comprehensive Analysis of Transcriptomic Data	workflows	1.20.0	3.13	3.23	current
ExpressionNormalizationWorkflow Bioc Gene Expression Normalization Workflow	workflows	1.38.0	3.2	3.23	current
GeoMxWorkflows Bioc GeoMx Digital Spatial Profiler (DSP) data analysis workflows	workflows	1.18.0	3.14	3.23	current
RNAseq123 Bioc RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR	workflows	1.36.0	3.4	3.23	current
RnaSeqGeneEdgeRQL Bioc Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline	workflows	1.36.0	3.5	3.23	current
fluentGenomics Bioc A plyranges and tximeta workflow	workflows	1.24.0	3.11	3.23	current
maEndToEnd Bioc An end to end workflow for differential gene expression using Affymetrix microarrays	workflows	2.32.0	3.2	3.23	current
rnaseqDTU Bioc RNA-seq workflow for differential transcript usage following Salmon quantification	workflows	1.32.0	3.8	3.23	current
rnaseqGene Bioc RNA-seq workflow: gene-level exploratory analysis and differential expression	workflows	1.36.0	3.0	3.23	current
seqpac Bioc Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts	workflows	1.12.0	3.17	3.23	current