NewWave

Description

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.

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Topics

People

• Federico Agostinis author maintainer
• Davide Risso author
• Chiara Romualdi author
• Gabriele Sales author