BatChef

Description

This package implements a variety of methods for batch correction in single-cell RNA sequencing (scRNA-seq) data. It incorporates quantitative metrics (e.g. Wasserstein distance, Adjusted Rand Index) to evaluate their performance. Furthermore, the package assists users in identifying and applying the optimal method for specific datasets.

Code

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Topics

People

• Elena Zuin author maintainer
• Davide Risso contributor
• Chiara Romualdi contributor
• Gabriele Sales contributor