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Topic: VariantAnnotation or MicroarrayData

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167 packages on Bioconductor tagged VariantAnnotation or MicroarrayData, most distinct IPs first

VariantAnnotation and MicroarrayData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,41926
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,7228
sesameData
Supporting Data for SeSAMe PackageWanding Zhou		Wanding Zhouexperiment5 May 20261,19872
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,16112
PureCN
Copy number calling and SNV classification using targeted short read sequencingMarkus Riester		Markus Riestersoftware28 Apr 20261,083101
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20269497
podkat
Position-Dependent Kernel Association TestUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 202694659
HelloRanges
Introduce *Ranges to bedtools usersMichael Lawrence		Michael Lawrencesoftware28 Apr 202678378
TVTB
TVTB: The VCF Tool BoxKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 2026758159
StructuralVariantAnnotation
Variant annotations for structural variantsDaniel Cameron		Daniel Cameronsoftware28 Apr 202675890
minfiData
Example data for the Illumina Methylation 450k arrayKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 2026731146
PCAN
Phenotype Consensus ANalysis (PCAN)Matthew Page		Matthew Pagesoftware28 Apr 202672914
musicatk
Mutational Signature Comprehensive Analysis ToolkitJoshua D. Campbell		Joshua D. Campbellsoftware28 Apr 2026726275
appreci8R
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPVSarah Sandmann		Sarah Sandmannsoftware28 Apr 2026706162
myvariant
Accesses MyVariant.info variant query and annotation servicesAdam Mark, Chunlei Wu		Adam Mark, Chunlei Wusoftware28 Apr 2026701123
ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasAnil Thanki		Anil Thankisoftware28 Apr 202668664
seqCAT
High Throughput Sequencing Cell Authentication ToolkitErik Fasterius		Erik Fasteriussoftware28 Apr 202668099
cellbaseR
Querying annotation data from the high performance Cellbase webMohammed OE Abdallah		Mohammed OE Abdallahsoftware28 Apr 202666662
Illumina450ProbeVariants.db
Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probesTiffany Morris		Tiffany Morrisexperiment5 May 20266630
ProteoDisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequencesJob van Riet		Job van Rietsoftware28 Apr 202665899
VCFArray
Representing on-disk / remote VCF files as array-like objectsQian Liu		Qian Liusoftware28 Apr 202665781
fibroEset
exprSet for Karaman et al. (2003) fibroblasts dataSylvia Merk		Sylvia Merkexperiment5 May 20266327
svaRetro
Retrotransposed transcript detection from structural variantsRuining Dong		Ruining Dongsoftware28 Apr 202661991
SigsPack
Mutational Signature Estimation for Single SamplesFranziska Schumann		Franziska Schumannsoftware28 Apr 202661680
geneAttribution
Identification of candidate genes associated with genetic variationArthur Wuster		Arthur Wustersoftware28 Apr 202661076
gageData
Auxillary data for gage packageWeijun Luo		Weijun Luoexperiment5 May 20265880
katdetectr
Detection, Characterization and Visualization of Kataegis in Sequencing DataDaan Hazelaar		Daan Hazelaarsoftware28 Apr 2026582124
svaNUMT
NUMT detection from structural variant callsRuining Dong		Ruining Dongsoftware28 Apr 202658191
ipdDb
IPD IMGT/HLA and IPD KIR database for Homo sapiensSteffen Klasberg		Steffen Klasbergsoftware28 Apr 202657465