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Topic: Homo_sapiens or Pathways

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Release: Release 3.7 (2018)

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387 packages on Bioconductor tagged Homo_sapiens or Pathways, most distinct IPs first

Homo_sapiens and Pathways in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)Bioconductor Package Maintainer		Bioconductor Package Maintainersoftware18 Jun 202645,88624
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
enrichplot
Visualization of Functional Enrichment ResultGuangchuang Yu		Guangchuang Yusoftware28 Sep 202630,370128
org.Hs.eg.db
Genome wide annotation for HumanBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record29,81342
clusterProfiler
A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu		Guangchuang Yusoftware19 Oct 202629,661138
DOSE
Disease Ontology Semantic and Enrichment analysisGuangchuang Yu		Guangchuang Yusoftware28 Apr 202628,87377
fgsea
Fast Gene Set Enrichment AnalysisAlexey Sergushichev		Alexey Sergushichevsoftware28 Apr 202628,66038
GOSemSim
GO-terms Semantic Similarity MeasuresGuangchuang Yu		Guangchuang Yusoftware30 Jun 202627,49548
annotate
Annotation for microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202622,55744
GSEABase
Gene set enrichment data structures and methodsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202613,34446
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
graphite
GRAPH Interaction from pathway Topological EnvironmentGabriele Sales		Gabriele Salessoftware28 Apr 20267,01248
KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang		Jitao David Zhangsoftware28 Apr 20266,80714
TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva		Tiago Chedraoui Silvasoftware28 Apr 20266,750103
ReactomePA
Reactome Pathway AnalysisGuangchuang Yu		Guangchuang Yusoftware28 Apr 20266,720141
TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record6,25875
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
BSgenome.Hsapiens.UCSC.hg38
Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record4,98960
hgu133plus2.db
Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record4,22743
TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record3,91975
EnsDb.Hsapiens.v86
Ensembl based annotation packageJohannes Rainer		Johannes Rainerannotationno date on record3,38981
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects		no date on record2,988
IlluminaHumanMethylation450kanno.ilmn12.hg19
Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen		Kasper Daniel Hansenannotationno date on record2,852144
BSgenome.Hsapiens.UCSC.hg19
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,84258
globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman		Jelle Goemansoftware28 Apr 20262,84250
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
Category
Category AnalysisBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,35557
GlobalAncova
Global test for groups of variables via model comparisonsManuela Hummel		Manuela Hummelsoftware28 Apr 20262,06270