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Topic: ExperimentData or Mus_musculus or SingleCell

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Release: Release 3.7 (2018)

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499 packages on Bioconductor tagged ExperimentData or Mus_musculus or SingleCell, most distinct IPs first

ExperimentData, Mus_musculus and SingleCell in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
SingleCellExperiment
S4 Classes for Single Cell DataDavide Risso		Davide Rissosoftware28 Apr 202624,48325
HDF5Array
HDF5 datasets as array-like objects in RHervé Pagès		Hervé Pagèssoftware28 Apr 202620,53728
org.Mm.eg.db
Genome wide annotation for MouseBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record13,52042
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
TCGAbiolinksGUI.data
Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 20265,7580
AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Gert Hulselmans		Gert Hulselmanssoftware29 Apr 20264,610115
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1717
DropletUtils
Utilities for Handling Single-Cell Droplet DataJonathan Griffiths		Jonathan Griffithssoftware27 Sep 20264,10759
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
HSMMSingleCell
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell		Cole Trapnellexperiment5 May 20263,5530
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
airway
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love		Michael Loveexperiment5 May 20262,85425
geneLenDataBase
Lengths of mRNA transcripts for a number of genomesFederico Marini		Federico Mariniexperiment5 May 20262,37898
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,314121
chromVAR
Chromatin Variation Across RegionsAlicia Schep		Alicia Schepsoftware11 May 20262,255134
TxDb.Mmusculus.UCSC.mm10.knownGene
Annotation package for TxDb object(s)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,19275
bcellViper
Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez		Mariano Javier Alvarezexperiment5 May 20262,1777
BSgenome.Mmusculus.UCSC.mm10
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,15258
multiMiR
Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey		Spencer Mahaffeysoftware28 Apr 20261,56953
zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq DataDavide Risso		Davide Rissosoftware28 Apr 20261,56974
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108
splatter
Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia		Luke Zappiasoftware28 Apr 20261,55361
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
tximportData
tximportDataMichael Love		Michael Loveexperiment5 May 20261,3300
scmap
A tool for unsupervised projection of single cell RNA-seq dataVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,27062
CATALYST
Cytometry dATa anALYSis ToolsHelena L. Crowell		Helena L. Crowellsoftware28 Apr 20261,265176
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,25630