Packages
447 packages on Bioconductor tagged ExperimentData or Mus_musculus, most distinct IPs first
ExperimentData and Mus_musculus in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| ggtree an R package for visualization of tree and annotation dataGuangchuang Yu | Guangchuang Yu | software | 29 Oct 2026 | 34,372 | 79 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| TCGAbiolinksGUI.data Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva | Tiago Chedraoui Silva | experiment | 5 May 2026 | 5,758 | 0 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| HSMMSingleCell Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell | Cole Trapnell | experiment | 5 May 2026 | 3,553 | 0 |
| airway RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love | Michael Love | experiment | 5 May 2026 | 2,854 | 25 |
| geneLenDataBase Lengths of mRNA transcripts for a number of genomesFederico Marini | Federico Marini | experiment | 5 May 2026 | 2,378 | 98 |
| scRNAseq Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun | Aaron Lun | experiment | 5 May 2026 | 2,314 | 121 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| multiMiR Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey | Spencer Mahaffey | software | 28 Apr 2026 | 1,569 | 53 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| tximportData tximportDataMichael Love | Michael Love | experiment | 5 May 2026 | 1,330 | 0 |
| cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil | Gundula Povysil | software | 28 Apr 2026 | 1,256 | 30 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| affydata Affymetrix Data for Demonstration PurposeRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 1,244 | 12 |
| golubEsets exprSets for golub leukemia dataVince Carey | Vince Carey | experiment | 5 May 2026 | 1,207 | 7 |
| flowDensity Sequential Flow Cytometry Data GatingMehrnoush Malek | Mehrnoush Malek | software | 28 Apr 2026 | 1,125 | 104 |
| RNAseqData.HNRNPC.bam.chr14 Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 1,069 | 0 |
| faahKO Saghatelian et al. (2004) FAAH knockout LC/MS dataSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,061 | 144 |
| mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,058 | 43 |
| bladderbatch Bladder gene expression data illustrating batch effectsJeffrey T. Leek | Jeffrey T. Leek | experiment | 5 May 2026 | 1,049 | 7 |
| SeqSQC A bioconductor package for sample quality check with next generation sequencing dataQian Liu | Qian Liu | software | 28 Apr 2026 | 1,001 | 113 |
| pasillaBamSubset Subset of BAM files from "Pasilla" experimentHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 997 | 0 |
| EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 955 | 81 |
| GSVAdata Data employed in the vignette of the GSVA packageRobert Castelo | Robert Castelo | experiment | 28 Jul 2026 | 955 | 78 |
| mouse4302cdf mouse4302cdfBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 944 | 42 |
| curatedMetagenomicData Curated Metagenomic Data of the Human MicrobiomeLucas schiffer | Lucas schiffer | experiment | 5 May 2026 | 913 | 148 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |