R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: SequencingData

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter

First letter

Release: Release 3.6 (2017)

In the current release or not

Bioconductor release

Clear all

77 packages on Bioconductor, most distinct IPs first

SequencingData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
HSMMSingleCell
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell		Cole Trapnellexperiment5 May 20263,5530
airway
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love		Michael Loveexperiment5 May 20262,85425
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,314121
multiMiR
Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey		Spencer Mahaffeysoftware28 Apr 20261,56953
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108
tximportData
tximportDataMichael Love		Michael Loveexperiment5 May 20261,3300
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0690
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269970
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202695578
curatedMetagenomicData
Curated Metagenomic Data of the Human MicrobiomeLucas schiffer		Lucas schifferexperiment5 May 2026913148
ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasAnil Thanki		Anil Thankisoftware28 Apr 202682764
zebrafishRNASeq
Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)Davide Risso		Davide Rissoexperiment5 May 20267020
yeastNagalakshmi
Yeast genome RNA sequencing data based on Nagalakshmi et. al.Bioconductor Package Maintainer		Bioconductor Package Maintainerexperiment5 May 20265870
harbChIP
Experimental Data Package: harbChIPVJ Carey		VJ Careyexperiment5 May 202658116
DMRcatedata
Data Package for DMRcateTim Peters		Tim Petersexperiment5 May 2026522208
parathyroidSE
RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.		no date on record464
JASPAR2014
Data package for JASPARGe Tan		Ge Tanexperiment5 May 202643015
leeBamViews
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009VJ Carey		VJ Careyexperiment5 May 202642858
yeastRNASeq
Yeast RNA-Seq Experimental Data from Lee et al. 2008J. Bullard		J. Bullardexperiment5 May 20264210
curatedOvarianData
Clinically Annotated Data for the Ovarian Cancer TranscriptomeLevi Waldron		Levi Waldronexperiment5 May 20264217
RnaSeqSampleSizeData
RnaSeqSampleSizeDataShilin Zhao		Shilin Zhaoexperiment5 May 202640711
miRmine
Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment		no date on record406
tinesath1probe
Probe sequence data for microarrays of type tinesath1Tine Casneuf		Tine Casneufexperiment5 May 202640442
tweeDEseqCountData
RNA-seq count data employed in the vignette of the tweeDEseq packageDolors Pelegri-Siso		Dolors Pelegri-Sisoexperiment5 May 20263777
fission
RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.Michael Love		Michael Loveexperiment5 May 202637725
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
bsseqData
Example whole genome bisulfite data for the bsseq packageKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 202635090
HelloRangesData
Data for the HelloRanges tutorial vignetteMichael Lawrence		Michael Lawrenceexperiment5 May 20263460
M3DExampleData
M3Drop Example DataTallulah Andrews		Tallulah Andrewsexperiment5 May 20263430
LungCancerLines
Reads from Two Lung Cancer Cell LinesMichael Lawrence		Michael Lawrenceexperiment5 May 202634229