tweeDEseqCountData
Bioc currentRNA-seq count data employed in the vignette of the tweeDEseq package
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
RNA-seq count data from Pickrell et al. (2010) employed to illustrate the use of the Poisson-Tweedie family of distributions with the tweeDEseq package.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 0 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
696
Files
24
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
1
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-12-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 8includes a package overview page
- Examples that run
- 100%7 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 100%
Repository practices
Checks run against github.com/isglobal-brge/tweedeseqcountdata on 2026-10-18.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| XiEgenes | vector | 63 elements | No other package |
| annotEnsembl63 | data.frame | 50,451 × 8 | No other package |
| cheung.eset | – | – | – |
| cqnNormCommon | cqn | 15 elements | No other package |
| cqnNormCommonSamples | cqn | 15 elements | No other package |
| hkGenes | vector | 669 elements | No other package |
| huangArrayRMAnoBatchCommon.eset | – | – | – |
| huangArrayRMAnoBatchCommonSamples.eset | – | – | – |
| montgomery.eset | – | – | – |
| msYgenes | vector | 32 elements | No other package |
| pickrell.eset | – | – | – |
| pickrell1.eset | – | – | – |
| pickrell1Norm.eset | – | – | – |
| pickrell1countsCQNcommon.eset | – | – | – |
| pickrell1countsCQNcommonSamples.eset | – | – | – |
| pickrell1countsCommon.eset | – | – | – |
| pickrell1countsCommonSamples.eset | – | – | – |
| pickrellNorm.eset | – | – | – |
Topics
Suggested by (4)
People
- Dolors Pelegri-Siso author maintainer
- Robert Castelo author
- Mikel Esnaola author
- Juan R. Gonzalez author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("tweeDEseqCountData")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.