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leeBamViews

Bioc current

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

v1.48.0 · experiment · Artistic 2.0

Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

data from PMID 19096707; prototype for managing multiple NGS samples

Test coverage

Line coverage

Expression

Tests / Examples

Functions

1 0 exported

Complexity

7 avg / 7 max

Call network

1 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

843

Files

33

Compiled share

0%

Has compiled src

No

Language breakdown

R 68 (8.1%)Docs 312 (37%)Vignettes 463 (54.9%)

API

Exported functions

0

Internal functions

1

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

11.1%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.15.0

System requirements

C++ standard

License

Artistic 2.0

License flags

not SPDX, not OSI

History

Versions

26

First release

2013-12-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

4

LOC over versions

v2.13: 920 LOCv2.14: 922 LOCv3.0: 922 LOCv3.1: 922 LOCv3.2: 922 LOCv3.3: 922 LOCv3.4: 922 LOCv3.5: 922 LOCv3.6: 922 LOCv3.7: 922 LOCv3.8: 922 LOCv3.9: 922 LOCv3.10: 922 LOCv3.11: 840 LOCv3.12: 840 LOCv3.13: 840 LOCv3.14: 843 LOCv3.15: 843 LOCv3.16: 843 LOCv3.17: 843 LOCv3.18: 843 LOCv3.19: 843 LOCv3.20: 843 LOCv3.21: 843 LOCv3.22: 843 LOCv3.23: 843 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Depended on by (1)

Bioconductor (1)

People

VJ Carey

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("leeBamViews")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for leeBamViews version 1.48.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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