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Topic: Spatial or ExpressionData or Metabolomics

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Release: Release 3.4 (2016)

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65 packages on Bioconductor tagged Spatial or ExpressionData or Metabolomics, most distinct IPs first

Spatial, ExpressionData and Metabolomics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
graphite
GRAPH Interaction from pathway Topological EnvironmentGabriele Sales		Gabriele Salessoftware28 Apr 20267,01248
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 20262,96997
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,314121
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
RMassBank
Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag		RMassBank at Eawagsoftware28 Apr 20261,116175
EGSEA
Ensemble of Gene Set Enrichment AnalysesMonther Alhamdoosh		Monther Alhamdooshsoftware28 Apr 20261,092192
fmcsR
Mismatch Tolerant Maximum Common Substructure SearchingThomas Girke		Thomas Girkesoftware28 Apr 20261,08768
ChemmineOB
R interface to a subset of OpenBabel functionalitiesThomas Girke		Thomas Girkesoftware28 Apr 20261,0478
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202695578
yamss
Tools for high-throughput metabolomicsLeslie Myint		Leslie Myintsoftware28 Apr 202692270
statTarget
Statistical Analysis of Molecular ProfilesHemi Luan		Hemi Luansoftware28 Apr 202690526
BridgeDbR
Code for using BridgeDb identifier mapping framework from within REgon Willighagen		Egon Willighagensoftware28 Apr 20269043
biosigner
Signature discovery from omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 2026867102
bioassayR
Cross-target analysis of small molecule bioactivityThomas Girke		Thomas Girkesoftware28 Apr 202684474
ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasAnil Thanki		Anil Thankisoftware28 Apr 202682764
MetCirc
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics dataThomas Naake		Thomas Naakesoftware28 Apr 202680875
msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in MetabolomicsThomas N. Lawson		Thomas N. Lawsonsoftware28 Apr 202680370
eiR
Accelerated similarity searching of small moleculesThomas Girke		Thomas Girkesoftware28 Apr 202679770
IPO
Automated Optimization of XCMS Data Processing parametersThomas Lieb		Thomas Liebsoftware28 Apr 2026793160
cosmiq
cosmiq - COmbining Single Masses Into QuantitiesDavid Fischer		David Fischersoftware28 Apr 2026792146
SIMAT
GC-SIM-MS data processing and alaysis toolM. R. Nezami Ranjbar		M. R. Nezami Ranjbarsoftware28 Apr 202678140
metabomxtr
A package to run mixture models for truncated metabolomics data with normal or lognormal distributionsMichael Nodzenski		Michael Nodzenskisoftware28 Apr 202677149