bioassayR
Bioc currentCross-target analysis of small molecule bioactivity
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
45 29 exported
Complexity
5.8 avg / 26 max
Call network
45 nodes / 38 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,975
Files
71
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
29
Internal functions
16
Testing & CI
Has tests
Yes
Test-to-code ratio
0.22
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
37.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-10-14
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 71%
- References docs
- 21%
Topics
People
Thomas Girke
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("bioassayR")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.