BridgeDbR
Bioc currentCode for using BridgeDb identifier mapping framework from within R
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
17 16 exported
Complexity
2.9 avg / 8 max
Call network
17 nodes / 8 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,478
Files
64
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
16
Internal functions
1
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.55
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3.0
System requirements
–
C++ standard
–
License
AGPL-3
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 17includes a package overview page
- Examples that run
- 56%9 run in a plain check · 7 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- 2. Secondary IDs HTML
- 1. Tutorial HTML
Repository practices
2 development-tooling and community-health practices detected across 1 family in the upstream repository
Checks run against github.com/bridgedb/bridgedbr on 2026-10-18.
Topics
People
- Egon Willighagen author maintainer
- Tooba Abbassi-Daloii author
- Anwesha Bohler author
- Lars Eijssen author
- Chris Leemans author
- Denise Slenter author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("BridgeDbR")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.