Packages
1,550 packages on Bioconductor tagged AnnotationData or Infrastructure, most distinct IPs first
AnnotationData and Infrastructure in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| BiocVersion Set the appropriate version of Bioconductor packagesBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 30 Oct 2025 | 78,553 | 0 |
| S4Vectors Foundation of vector-like and list-like containers in BioconductorHervé Pagès | Hervé Pagès | software | 16 Sep 2026 | 74,754 | 7 |
| BiocGenerics S4 generic functions used in BioconductorHervé Pagès | Hervé Pagès | software | 14 May 2026 | 74,574 | 5 |
| IRanges Foundation of integer range manipulation in BioconductorHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 68,817 | 8 |
| Biobase Biobase: Base functions for BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 64,555 | 6 |
| XVector Foundation of external vector representation and manipulation in BioconductorHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 63,837 | 10 |
| BiocParallel Bioconductor facilities for parallel evaluationJiefei Wang | Jiefei Wang | software | 29 Apr 2026 | 59,780 | 12 |
| SparseArray High-performance sparse data representation and manipulation in RHervé Pagès | Hervé Pagès | software | 22 Sep 2026 | 59,629 | 19 |
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| DelayedArray A unified framework for working transparently with on-disk and in-memory array-like datasetsHervé Pagès | Hervé Pagès | software | 26 May 2026 | 57,500 | 20 |
| GenomicRanges Representation and manipulation of genomic intervalsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 56,974 | 10 |
| S4Arrays Foundation of array-like containers in BioconductorHervé Pagès | Hervé Pagès | software | 22 Sep 2026 | 53,675 | 14 |
| SummarizedExperiment A container (S4 class) for matrix-like assaysHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 53,484 | 24 |
| MatrixGenerics S4 Generic Summary Statistic Functions that Operate on Matrix-Like ObjectsPeter Hickey | Peter Hickey | software | 28 Apr 2026 | 52,710 | 2 |
| Seqinfo A simple S4 class for storing basic information about a collection of genomic sequencesHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 48,593 | 9 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| GenomeInfoDb Utilities for manipulating chromosome names, including modifying them to follow a particular naming styleHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 37,356 | 20 |
| GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer | Bioconductor Maintainer | annotation | no date on record | 36,797 | 0 |
| ggtree an R package for visualization of tree and annotation dataGuangchuang Yu | Guangchuang Yu | software | 29 Oct 2026 | 34,372 | 79 |
| GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 33,694 | 42 |
| treeio Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu | Guangchuang Yu | software | 30 Apr 2026 | 31,966 | 39 |
| Rsamtools Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 30,337 | 28 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| BiocFileCache Manage Files Across SessionsLori Shepherd | Lori Shepherd | software | 28 Apr 2026 | 29,416 | 41 |
| Rhdf5lib hdf5 library as an R packageHugo Gruson | Hugo Gruson | software | 28 Apr 2026 | 28,654 | 5 |
| Rhtslib HTSlib high-throughput sequencing library as an R packageHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 28,083 | 1 |
| rhdf5 R Interface to HDF5Hugo Gruson | Hugo Gruson | software | 14 Sep 2026 | 27,620 | 8 |
| GenomicAlignments Representation and manipulation of short genomic alignmentsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 27,006 | 41 |
| rhdf5filters HDF5 Compression FiltersHugo Gruson | Hugo Gruson | software | 28 Jul 2026 | 26,200 | 6 |
| rtracklayer R interface to genome annotation files and the UCSC genome browserMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 26,119 | 56 |