Packages
336 packages on Bioconductor tagged Spatial or MicroarrayData or GraphAndNetwork, most distinct IPs first
Spatial, MicroarrayData and GraphAndNetwork in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| graph graph: A package to handle graph data structuresBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 25,655 | 7 |
| GSEABase Gene set enrichment data structures and methodsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 13,344 | 46 |
| Rgraphviz Provides plotting capabilities for R graph objectsKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 11,263 | 10 |
| SpatialExperiment S4 Class for Spatially Resolved -omics DataDario Righelli | Dario Righelli | software | 28 Apr 2026 | 10,718 | 64 |
| RBGL An interface to the BOOST graph libraryBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 10,698 | 9 |
| graphite GRAPH Interaction from pathway Topological EnvironmentGabriele Sales | Gabriele Sales | software | 28 Apr 2026 | 7,012 | 48 |
| KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang | Jitao David Zhang | software | 28 Apr 2026 | 6,807 | 14 |
| pathview a tool set for pathway based data integration and visualizationWeijun Luo | Weijun Luo | software | 28 Apr 2026 | 5,706 | 50 |
| Rigraphlib igraph library as an R packageAaron Lun | Aaron Lun | software | 28 Apr 2026 | 2,850 | 5 |
| OmnipathR OmniPath web service client and moreDenes Turei | Denes Turei | software | 30 Apr 2026 | 2,685 | 89 |
| GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,437 | 63 |
| GENIE3 GEne Network Inference with Ensemble of treesVan Anh Huynh-Thu | Van Anh Huynh-Thu | software | 28 Apr 2026 | 2,253 | 26 |
| SPIA Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca | Adi Laurentiu Tarca | software | 28 Apr 2026 | 1,839 | 15 |
| RCy3 Functions to Access and Control CytoscapeJing Chen | Jing Chen | software | 28 Apr 2026 | 1,822 | 49 |
| minet Mutual Information NETworksPatrick E. Meyer | Patrick E. Meyer | software | 28 Apr 2026 | 1,543 | 1 |
| qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo | Robert Castelo | software | 28 Apr 2026 | 1,495 | 81 |
| EnrichmentBrowser Seamless navigation through combined results of set-based and network-based enrichment analysisLudwig Geistlinger | Ludwig Geistlinger | software | 28 Apr 2026 | 1,432 | 92 |
| RedeR Interactive visualization and manipulation of nested networksMauro Castro | Mauro Castro | software | 14 Jul 2026 | 1,317 | 23 |
| BioNet Routines for the functional analysis of biological networksMarcus Dittrich | Marcus Dittrich | software | 28 Apr 2026 | 1,262 | 50 |
| sesameData Supporting Data for SeSAMe PackageWanding Zhou | Wanding Zhou | experiment | 5 May 2026 | 1,250 | 72 |
| affydata Affymetrix Data for Demonstration PurposeRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 1,244 | 12 |
| GeneNetworkBuilder GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression DataJianhong Ou | Jianhong Ou | software | 28 Apr 2026 | 1,216 | 69 |
| Banksy Spatial transcriptomic clusteringJoseph Lee | Joseph Lee | software | 3 May 2026 | 1,166 | 109 |
| ggspavis Visualization functions for spatial transcriptomics dataLukas M. Weber | Lukas M. Weber | software | 16 Jul 2026 | 1,146 | 76 |
| rTRM Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction NetworksDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,117 | 47 |
| keggorthology graph support for KO, KEGG OrthologyVJ Carey | VJ Carey | software | 28 Apr 2026 | 1,110 | 45 |
| SPOTlight `SPOTlight`: Spatial Transcriptomics DeconvolutionMarc Elosua-Bayes | Marc Elosua-Bayes | software | 28 Apr 2026 | 1,110 | 46 |
| pandaR PANDA AlgorithmJoseph N. Paulson | Joseph N. Paulson | software | 28 Apr 2026 | 1,093 | 37 |
| EGSEA Ensemble of Gene Set Enrichment AnalysesMonther Alhamdoosh | Monther Alhamdoosh | software | 28 Apr 2026 | 1,092 | 192 |
| hipathia HiPathia: High-throughput Pathway AnalysisMarta R. Hidalgo | Marta R. Hidalgo | software | 28 Apr 2026 | 1,081 | 154 |