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ggspavis

Bioc current

Visualization functions for spatial transcriptomics data

v1.18.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.14 · Oct 27, 2021

Current · Requires R 4.6

1.0 In 10 of 49 releases 3.23

Description

Visualization functions for spatial transcriptomics data. Includes functions to generate several types of plots, including spot plots, feature (molecule) plots, reduced dimension plots, spot-level quality control (QC) plots, and feature-level QC plots, for datasets from the 10x Genomics Visium and other technological platforms. Datasets are assumed to be in either SpatialExperiment or SingleCellExperiment format.

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Topics

Software › Technology › Spatial
Software › Technology › SingleCell
Software › ResearchField › Transcriptomics
Software › AssayDomain › GeneExpression
Software › WorkflowStep › QualityControl
Software › StatisticalMethod › DimensionReduction

Depended on by (3)

Bioconductor (3)

smoothclust HCATonsilData OSTA

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