GENIE3
Bioc currentGEne Network Inference with Ensemble of trees
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
56 1 exported
Complexity
17 avg / 38 max
Call network
56 nodes / 52 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,860
Files
16
Compiled share
68.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
2
Internal functions
3
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.32
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-10-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (4)
Bioconductor (4)
People
Van Anh Huynh-Thu